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Series GSE38391 Query DataSets for GSE38391
Status Public on Jun 01, 2015
Title Next generation sequencing facilitates quantitative analysis of GATA2 binding profile in LNCaP cells.
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We find 36,797 high-confidence (p<1E-8) GATA2 binding sites and GATA2 bound primarily to distal elements in LNCaP cells.
Overall design Examination of GATA2 binding sites in biological duplicate LNCaP samples.
Contributor(s) Wu D, Ye Z, Wang Q
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 01, 2012
Last update date May 15, 2019
Contact name Zhenqing Ye
Organization name The University of Texas Health Science Center at San Antonio
Department Department of Molecular Medicine
Street address 7703 Floyd Curl Drive
City San Antonio
State/province Texas
ZIP/Postal code 78229
Country USA
Platforms (1)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (2)
GSM941194 LN-REP1_ChIPSeq
GSM941195 LN-REP2_ChIPSeq
This SubSeries is part of SuperSeries:
GSE38452 A Class of H3K4me1/H3K9me2 marked active GATA2 enhancers directs a GATA2-dependent transcription program underlying prostate cancer progression.
BioProject PRJNA167795
SRA SRP013472

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE38391_LNCaP_GATA2_hg19_macs_p8_peaks.bed.gz 528.7 Kb (ftp)(http) BED
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Raw data are available in SRA
Processed data are available on Series record

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