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Series GSE38258 Query DataSets for GSE38258
Status Public on Mar 01, 2013
Title CDK8 ChIP-seq from HCT116 cells in normoxia and hypoxia
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To test if CDK8 acts directly at HIF1A target genes, we performed ChIP-seq experiments in HCT116 cells under normoxic and hypoxic conditions.
 
Overall design ChIP-seq for CDK8 versus Input under normoxia and 24hrs hypoxia (1% O2).
 
Contributor(s) Galbraith M
Citation(s) 23746844
Submission date May 25, 2012
Last update date May 15, 2019
Contact name Matthew D Galbraith
Organization name University of Colorado Anschutz Medical Campus
Department Pharmacology
Lab Espinosa
Street address RC1-N, Mail Stop 8303, Rm. P18-6114 12800 E. 19th Ave.
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (4)
GSM937560 ChIP input DNA
GSM937561 CDK8-ChIP enriched DNA, normoxia
GSM937562 CDK8-ChIP enriched DNA, hypoxia, replicate1
Relations
SRA SRP013394
BioProject PRJNA167526

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE38258_RAW.tar 5.7 Gb (http)(custom) TAR (of BED, BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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