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| Status |
Public on Nov 26, 2012 |
| Title |
Performance Comparison of the Affymetrix SNP6.0 and Cytogenetic 2.7M Whole-genome Microarrays in Complex Cancer Samples |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
|
| Summary |
We performed a comparison analysis of the Affymetrix arrays SNP6.0 genome wide array (SNP6.0) and cytogenetic 2.7M whole-genome array (Cyto2.7M) using nine human samples. We compared the two array types with respect to four parameters including the size and breakpoints of the alterations detected, the actual CN assigned to the CNVs as well as long stretches of loss of heterozygosity. Overall, we found very good consistency between the two types of array on all parameters compared, even in regions with very complex changes.
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| |
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| Contributor(s) |
Bødker JS, Gyrup C, Johansen P, Schmitz A, Madsen J, Johnsen HE, Boegsted M, Dybkær K, Nyegaard M |
| Citation(s) |
23182917 |
| |
| Submission date |
May 14, 2012 |
| Last update date |
Nov 27, 2018 |
| Contact name |
Julie Støve Bødker |
| E-mail(s) |
j.boedker@rn.dk
|
| Organization name |
Aalborg University Hospital
|
| Department |
Department of Heamatology
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| Lab |
Research Laboratory
|
| Street address |
Sdr. Skovvej 15
|
| City |
Aalborg |
| ZIP/Postal code |
9000 |
| Country |
Denmark |
| |
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| Platforms (2) |
| GPL6801 |
[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array |
| GPL11157 |
[Cytogenetics_Array] Affymetrix Cytogenetics Whole-Genome 2.7M Array |
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| Samples (18)
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| This SuperSeries is composed of the following SubSeries: |
| GSE37977 |
SNP6.0 copy number analysis of eight diffuse large B-cell samples and one matched blood sample |
| GSE37978 |
Cyto2.7M copy number analysis of eight diffuse large B-cell samples and one matched blood sample |
|
| Relations |
| BioProject |
PRJNA167153 |
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