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Series GSE3790 Query DataSets for GSE3790
Status Public on Feb 08, 2006
Title Human cerebellum, frontal cortex [BA4, BA9] and caudate nucleus HD tissue experiment
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Post mortem human brain tissue comparison between HD patients and controls from 3 brain regions - cerebellum, frontal cortex [BA4, BA9] and caudate nucleus. Gene expression analysed using linear models from LIMMA package in Bioconductor suite.
Keywords: disease state analysis
 
Overall design Large sample sizes were used to examine brain tissue gene expression at various stages of HD pathology. Three brain regions were profiled, compared and analysed for differential gene expression. The broad aim was to capture early stage gene expression changes in HD brains.
 
Contributor(s) Hodges A, Strand AD, Aragaki AK, Kuhn A, Sengstag T, Hughes G, Elliston LA, Hartog C, Goldstein DR, Thu D, Hollingsworth ZR, Collin F, Synek B, Holmans PA, Young AB, Wexler NS, Delorenzi M, Kooperberg C, Augood SJ, Faull RL, Olson JM, Jones L, Luthi-Carter R
Citation(s) 16467349
Submission date Dec 08, 2005
Last update date Aug 10, 2018
Contact name Lesley Jones, Angela Hodges
E-mail(s) jonesl1@cf.ac.uk, Angela.Hodges@iop.kcl.ac.uk
Phone +44 2920 745175
Organization name Cardiff University School of Medicine
Department Psychological Medicine
Street address Heath Park
City Cardiff
ZIP/Postal code CF14 4XN
Country United Kingdom
 
Platforms (2)
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
GPL97 [HG-U133B] Affymetrix Human Genome U133B Array
Samples (404)
GSM86787 1 CN A
GSM86788 10 CN A
GSM86789 101 CN A
Relations
BioProject PRJNA93987

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE3790_RAW.tar 1.4 Gb (http)(custom) TAR (of CEL)
SRA Run SelectorHelp
Raw data provided as supplementary file

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