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Series GSE36040 Query DataSets for GSE36040
Status Public on Dec 03, 2012
Title Diurnal and circadian gene expression profile of leaf throughout the entire growth of rice in the field
Platform organism Oryza sativa
Sample organism Oryza sativa Japonica Group
Experiment type Expression profiling by array
Summary A continuous gene expression profiling of leaves was performed at regular interval during a 48-hr period in 9 different growth stages from transplanting until harvesting to characterize the diurnal and circadian gene expression profile of rice and to understand the transcriptional program and physiological state throughout entire the growth under natural field conditions.
 
Overall design The uppermost fully expanded leaf in the main stem was collected at 2-hr intervals during a 48-hr period at 9 different growth stages encompassing the vegetative, reproductive and ripening stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.
 
Contributor(s) Sato Y, Antonio B, Namiki N, Nagamura Y
Citation(s) 23180765, 23180784
Submission date Feb 23, 2012
Last update date Dec 06, 2012
Contact name Yutaka Sato
E-mail(s) satoyu@affrc.go.jp
Organization name National Institute of Agrobiological Sciences
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platforms (1)
GPL6864 Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version)
Samples (225)
GSM879567 LeafBlade_15DAT_10:00
GSM879568 LeafBlade_15DAT_12:00
GSM879569 LeafBlade_15DAT_14:00
Relations
BioProject PRJNA151763

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE36040_RAW.tar 1.7 Gb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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