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| Status |
Public on Feb 14, 2012 |
| Title |
A molecular mechanism for compartmentalization and silencing of chromatin domains at the nuclear lamina [Tiling Array] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
These are the tiling array data for the experiments describing LADs on murine chromosomes 5, 12, and 15 by Dam-ID, as determined by LMNB and EMD Dam tagging and detection experiments
Supplemental Bed file contains GADA algorithm calls for genomic regions of chromosomes 5, 12 and 15 (-1= no lad, high confidence, 0=indeterminate, 1=LAD, high confidence)
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| Overall design |
2 experimental samples, both used the same 2 control CEL files (Dam_0519.CEL and Dam_0612.CEL provided at the foot of the Series record below). Also provided below are LMNA .CEL files. They were not processed as a comparison like for EMD and LMNB Samples in the scope of this study, but may be processed by users using the Tiling Array Software from Affy.
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| Contributor(s) |
Zullo J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Feb 13, 2012 |
| Last update date |
Mar 23, 2012 |
| Contact name |
Joseph M Zullo |
| E-mail(s) |
joseph_zullo@hms.harvard.edu, jmz4@uchicago.edu
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| Organization name |
University of Chicago
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| Department |
MGCB
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| Lab |
Singh
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| Street address |
929 E 57th Street
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| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
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| Platforms (1) |
| GPL6448 |
[Mm35b_P05R] Affymetrix Mouse Tiling 2.0R Set, Array 5 |
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| Samples (2) |
| GSM874683 |
LMNB intensity averaged duplicates |
| GSM874684 |
Emerin intensity averaged duplicates |
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| This SubSeries is part of SuperSeries: |
| GSE36049 |
A molecular mechanism for compartmentalization and silencing of chromatin domains at the nuclear lamina |
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| Relations |
| BioProject |
PRJNA155901 |
