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Series GSE35602 Query DataSets for GSE35602
Status Public on Mar 14, 2012
Title microRNA and Gene expression profiles in colorectal cancer stromal tissue
Organism Homo sapiens
Experiment type Expression profiling by array
Non-coding RNA profiling by array
Summary Using Laser Microdissection System (Leica Microsystems), RNA samples specific for stroma or epithelium were separately collected from thirteen colorectal cancer tissues and four normal tissues. Both microRNA microarray and gene expression microarray were performed in these samples.
Overall design Tissue samples from thirteen colorectal cancer tissues and four normal tissues were microdissected using Laser Microdissection System (Leica Microsystems), and RNA samples specific for stroma or epithelium were separately collected.MicroRNA and Gene expression profiles obtained from cancer stromal tissues were compared with that of normal colon stromal tissues. we used the commercially available Human Whole Genome Oligo DNA Microarray Kit (Agilent Technologies) for gene expresson analysis and microRNA array for microRNA analysis.
Contributor(s) Mori M, Mimori K, Nishida N
Citation(s) 22452939
Submission date Feb 07, 2012
Last update date Jan 23, 2019
Contact name Koshi Mimori
Phone 81-977-27-1650
Fax 81-977-27-1651
Organization name Kyushu university
Department Department of Surgery
Lab Kyushu Univeristy Beppu Hospital
Street address 4546 Tsurumihara
City Beppu
State/province Oita
ZIP/Postal code 874-0838
Country Japan
Platforms (2)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
GPL8227 Agilent-019118 Human miRNA Microarray 2.0 G4470B (miRNA ID version)
Samples (59)
GSM871409 KITA802_gene_epi
GSM871410 KITA802_gene_str
GSM871411 KITA842_gene_epi
BioProject PRJNA152525

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE35602_RAW.tar 223.4 Mb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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