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Series GSE34821 Query DataSets for GSE34821
Status Public on Jan 04, 2012
Title [E-MTAB-831] GENCODE PCR-Seq Batch VI
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch VI, which targets annotations from Gencode 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.

ArrayExpress Release Date: 2011-11-25

Publication Title: GENCODE: producing a reference annotation for ENCODE
Publication Author List: Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R

Person Roles: submitter
Person Last Name: Gonzalez
Person First Name: Jose
Person Mid Initials: M
Person Email: jmg@sanger.ac.uk
Person Phone: -498006
Person Address: Wellcome Trust Genome Campus, Hinxton, UK
Person Affiliation: Wellcome Trust Sanger Institute

Person Roles: investigator
Person Last Name: Hubbard
Person First Name: Tim
Person Mid Initials:
Person Email: th@sanger.ac.uk
Person Phone: -498055
Person Address: Wellcome Trust Genome Campus, Hinxton, UK
Person Affiliation: Wellcome Trust Sanger Institute

Person Roles: investigator
Person Last Name: Reymond
Person First Name: Alexandre
Person Mid Initials:
Person Email: Alexandre.Reymond@unil.ch
Person Phone:
Person Address: Lausanne, Switzerland
Person Affiliation: University of Lausanne

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

 
Overall design Experimental Design: organism_part_comparison_design
Experimental Design: reference_design
Experimental Design: co-expression_design
Experimental Factor Name: ORGANISM_PART
Experimental Factor Type: organism_part
Web link http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
 
Citation(s) 16925838
Submission date Jan 03, 2012
Last update date Dec 03, 2018
Organization European Bioinformatics Institute
E-mail miamexpress@ebi.ac.uk
Lab ArrayExpress
Street address Wellcome Trust Genome Campus
City Hinxton
State/province Cambridgeshire
ZIP/Postal code CB10 1SD
Country United Kingdom
 
Platforms (1)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (8)
GSM855902 [E-MTAB-831] polyA+_brain_6120217, Batch_6_brain
GSM855903 [E-MTAB-831] polyA+_heart_7082801A, Batch_6_heart
GSM855904 [E-MTAB-831] polyA+_kidney_7110096, Batch_6_kidney
Relations
SRA ERP000972
ArrayExpress E-MTAB-831
BioProject PRJNA150253

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided
Processed data not provided for this record
Raw data are available in SRA

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