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Series GSE34723 Query DataSets for GSE34723
Status Public on Jul 18, 2012
Title Gene Expression Commons: an open platform for absolute gene expression profiling
Organism Mus musculus
Experiment type Expression profiling by array
Third-party reanalysis
Summary Gene expression profiling using microarray has been limited to profiling of differentially expressed genes at comparison setting since probesets for different genes have different sensitivities. We overcome this limitation by using a very large number of varied microarray datasets as a common reference, so that statistical attributes of each probeset, such as dynamic range or a threshold between low and high expression can be reliably discovered through meta-analysis. This strategy is implemented in web-based platform named “Gene Expression Commons” (http://gexc.stanford.edu/ ) with datasets of 39 distinct highly purified mouse hematopoietic stem/progenitor/functional cell populations covering almost the entire hematopoietic system. Since the Gene Expression Commons is designed as an open platform, any scientist can explore gene expression of any gene, search by expression pattern of interest, submit their own microarray datasets, and design their own working models.
 
Overall design Gene expression profiling of entire mouse hematopoiesis system (39 populations) by Gene Expression Commons system.
The Samples (101) below comprise new and re-processed data and represent 37 populations.
The complete dataset comprising new, re-processed, and third-party reanalyzed data (107 samples), and representing all 39 populations, is linked below as a supplementary file.
Web link https://gexc.stanford.edu/
 
Contributor(s) Seita J, Sahoo D, Rossi DJ, Bhattacharya D, Serwold T, Inlay MA, Ehrlich LI, Fathman JW, Dill DL, Weissman IL
Citation(s) 22815738, 25418718
Submission date Dec 27, 2011
Last update date Feb 11, 2019
Contact name Jun Seita
E-mail jseita@stanford.edu
Phone 650-725-5808
Organization name Stanford University
Department Institute for Stem Cell Biology and Regenerative Medicine
Lab Weissman
Street address Lokey Stem Cell Building #G3101, 265 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (101)
GSM854035 HSC_rep1
GSM854036 HSC_rep2
GSM854037 HSC_rep3
Relations
Reanalysis of GSM207687
Reanalysis of GSM207688
Reanalysis of GSM207689
Reanalysis of GSM207690
Reanalysis of GSM207691
Reanalysis of GSM207692
BioProject PRJNA150429

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34723_RAW.tar 381.0 Mb (http)(custom) TAR (of CEL)
GSE34723_complete_dataset.txt.gz 15.5 Mb (ftp)(http) TXT
Raw data provided as supplementary file
Processed data included within Sample table
Processed data is available on Series record

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