|
| Status |
Public on Feb 05, 2013 |
| Title |
The transcription factor CDX2 maintains active enhancer in intestinal villus cells in vivo (ChIP-seq data) |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We established whether partner transcription factor binding, chromatin structure, or gene expression is compromised upon loss of partner factors cdx2 or hnf4a in mouse intestinal villi. This metadata file describes the ChIP-seq componant of that data
|
| |
|
| Overall design |
Intestinal epithelia were collected from mouse jejunum using EDTA-based chelation and ChIP-seq was performed, followed by next generation sequencing.
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| |
|
| Contributor(s) |
Liu XS, Shin H, Verzi MP, Shivdasani R |
| Citation(s) |
23129810, 25488664 |
| |
| Submission date |
Dec 20, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Michael P Verzi |
| Organization name |
Rutgers, the State University of New Jersey
|
| Department |
Genetics
|
| Lab |
Verzi
|
| Street address |
145 Bevier Road
|
| City |
Piscataway |
| State/province |
NJ |
| ZIP/Postal code |
08854 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
|
| Samples (11)
|
| GSM851117 |
CDX2 ChIP-Seq in WT mouse villus cells |
| GSM851118 |
CDX2 ChIP-Seq in WT mouse villus cells-2 |
| GSM851119 |
CDX2 ChIP-Seq in Hnf4a KO mouse villus cells |
| GSM851120 |
Hnf4a ChIP-Seq in WT mouse villus cells |
| GSM851121 |
Hnf4a ChIP-Seq in Cdx2 KO mouse villus cells |
| GSM851122 |
H3K4me2 ChIP-Seq in WT mouse villus cells |
| GSM851123 |
H3K4me2 ChIP-Seq in Cdx2 KO mouse villus cells |
| GSM851124 |
H3K4me2 ChIP-Seq in Hnf4a KO mouse villus cells |
| GSM851125 |
H3K4me2 ChIP-Seq in Cdx2-Cdx1 DKO mouse villus cells |
| GSM851126 |
H3K4me2 ChIP-Seq in Cdx2-Hnf4a D KO mouse villus cells |
| GSM851127 |
Mouse villus cell input DNA |
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| This SubSeries is part of SuperSeries: |
| GSE34568 |
The transcription factor CDX2 maintains active enhancer in intestinal villus cells in vivo |
|
| Relations |
| SRA |
SRP009904 |
| BioProject |
PRJNA156201 |
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