NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE34070 Query DataSets for GSE34070
Status Public on Dec 02, 2011
Title Histone protein and peptide reactivity within patients with systemic lupus erythematosus (SLE) from the ABCoN cohort
Platform organisms Gallus gallus; Homo sapiens; Bos taurus
Sample organism Homo sapiens
Experiment type Protein profiling by protein array
Summary The aim of the study was to test the hypothesis that IFN high SLE patient sera is more reactive to whole histone proteins and post-translationally modified histone peptides than IFN low patient sera.
We diluted patient sera 1:250 and incubated dilutions on a nitrocellulose-platform array printed with whole protein and peptide histone antigens.
 
Overall design In this study, serum from 30 patients subsetted into high and low interferon signature categories were profiled for IgG autoantibody reactivity to whole histone proteins, unmodified and post-translationally modified histone peptides. IFN high patient sera was found using the significance analysis of microarrays (SAM) algorithm to be significantly more reactive with whole histone and modified histone peptide antigens.
 
Contributor(s) Price JV, Tangsombatvisit S, Xu G, Levy D, Baechler EC, Gozani O, Varma M, Utz PJ, Liu CL
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Dec 01, 2011
Last update date Mar 23, 2012
Contact name Jordan Price
Organization name Stanford University
Street address CCSR 2250
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (2)
GPL14944 Intel array v2
GPL14945 Utz lab histone protein and peptide array
Samples (60)
GSM841248 7250 | IgG | IFN-high [Intel]
GSM841249 7248 | IgG | IFN-high [Intel]
GSM841250 7246 | IgG | IFN-high [Intel]
Relations
BioProject PRJNA149991

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34070_RAW.tar 14.7 Mb (http)(custom) TAR (of GPR)
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap