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Series GSE33328 Query DataSets for GSE33328
Status Public on Oct 30, 2011
Title Transcriptomic profiling of a glioblastoma multiforme patient with matched control brain tissue
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To investigate differential gene expression, we analyzed the entire transcriptomes of tumor and matched normal brain tissues obtained from a patient who had glioblastoma multiforme. We extracted and sequenced the mRNA using Illumina GA2 platform. The raw data was analyzed using our recently developed program called RNASEQR, as well as ERANGE, MapSplice, SpliceMap, and TopHat.
Overall design Tumor and matched control brain tissues were obtained from a Han-Chinese patient.
Contributor(s) Chen LY, Wei K
Citation(s) 22199257
Submission date Oct 29, 2011
Last update date Dec 03, 2018
Contact name Leslie Y Chen
Phone 206-7321392
Fax 206-7321299
Organization name Institute for Systems Biology
Lab Hood
Street address 401 Terry Avenue North
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
Platforms (1)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (2)
GSM824253 Peripheral brain tissue
GSM824254 Tumor brain tissue
SRA SRP009144
BioProject PRJNA148993

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33328_RAW.tar 9.5 Gb (http)(custom) TAR (of BAM)
Raw data are available in SRA
Processed data provided as supplementary file

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