|
| Status |
Public on Jan 01, 2013 |
| Title |
Cancer Outlier Gene Profile Sets Elucidate Pathways and Patient-Specific Targets in Head and Neck Squamous Cell Carcinoma [Affymetrix SNP6] |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
|
| Summary |
This study integrated Affymetrix SNPchip data for CNV estimation, Affymetrix HuEx1.0 data for gene expression estimation, and Illumina HumanMethylation27k BeadChip data for promoter methylation to estimate pathway activity.
|
| |
|
| Overall design |
Case:Control with HNSCC tumors and uvulopalatopharyngoplasty (UPPP) samples
|
| |
|
| Contributor(s) |
Ochs MF, Califano JA |
| Citation(s) |
26884679 |
| |
| Submission date |
Oct 25, 2011 |
| Last update date |
Oct 16, 2019 |
| Contact name |
Michael F Ochs |
| Organization name |
Johns Hopkins University
|
| Department |
Oncology Biostatistics
|
| Street address |
550 North Broadway, Ste 1103
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL6801 |
[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array |
|
| Samples (69)
|
|
| This SubSeries is part of SuperSeries: |
| GSE33232 |
Cancer Outlier Gene Profile Sets Elucidate Pathways and Patient-Specific Targets in Head and Neck Squamous Cell Carcinoma |
|
| Relations |
| BioProject |
PRJNA156617 |
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