NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE33136 Query DataSets for GSE33136
Status Public on Nov 01, 2011
Title Genome-wide Analysis of Nascent Transcription in Saccharomyces cerevisiae
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Summary We combined the nuclear run-on (NRO) assay which labels and captures nascent transcripts with high throughput DNA sequencing to examine transcriptional activity in Saccharomyces cerevisiae.
 
Overall design Examination of nascent transcripts and steady-state transcripts in exponentially growing and heat-shock treated yeast.
 
Contributor(s) Araya CL, McKinlay A, Fields S
Citation(s) 22384366
Submission date Oct 21, 2011
Last update date May 15, 2019
Contact name Carlos Araya
E-mail(s) claraya@gmail.com
Organization name University of Washington
Department Genome Sciences
Lab Stanley Fields
Street address 1705 NE Pacific
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platforms (1)
GPL9377 Illumina Genome Analyzer II (Saccharomyces cerevisiae)
Samples (13)
GSM820643 Nuclear run-on RNA library 1
GSM820644 Nuclear run-on RNA library 2
GSM820645 Nuclear run-on RNA library 3
Relations
SRA SRP009043
BioProject PRJNA149379

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33136_GSM820643-GSM820645_mapexpression_rpm_xro0_q30-rDNA_sense_0_0_af200.nov.bed.gz 141.1 Kb (ftp)(http) BED
GSE33136_GSM820646-GSM820648_mapexpression_rpm_yrn0_q30-rDNA_sense_0_0_af200.nov.bed.gz 139.5 Kb (ftp)(http) BED
GSE33136_GSM820649-GSM820651_mapexpression_rpm_hsp0_q30-rDNA_sense_0_0_af200.nov.bed.gz 124.3 Kb (ftp)(http) BED
GSE33136_GSM820652-GSM820654_mapexpression_rpm_hsr0_q30-rDNA_sense_0_0_af200.nov.bed.gz 133.6 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap