|
| Status |
Public on Jun 17, 2012 |
| Title |
Whole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Using whole genome bisulfite sequencing to provide single-base resolution of DNA methylation status in ros1, idm1, and rdd mutants and identify hypermethylated regions comparing to wild type Arabidopsis plants.
|
| |
|
| Overall design |
Examination of 3 different mutants' methylome. 8 samples (3 mutants, 1 WT, each has two biological replicates)
|
| |
|
| Contributor(s) |
Qian W, Miki D, Tang K, Liu R, Zhu J |
| Citation(s) |
22700931, 25933434 |
| |
| Submission date |
Oct 19, 2011 |
| Last update date |
Jan 13, 2020 |
| Contact name |
Jian-Kang Zhu |
| E-mail(s) |
zhu132@purdue.edu
|
| Organization name |
Purdue University
|
| Department |
Department of Horticulture and Landscape Architecture
|
| Street address |
625 Agriculture Mall Dr.
|
| City |
West Lafayette |
| State/province |
IN |
| ZIP/Postal code |
47907 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL11221 |
Illumina Genome Analyzer IIx (Arabidopsis thaliana) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (8)
|
|
| Relations |
| SRA |
SRP008994 |
| BioProject |
PRJNA149493 |
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