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Series GSE32758 Query DataSets for GSE32758
Status Public on Oct 13, 2011
Title H4K8ac.Kc
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary modENCODE_submission_3289
This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We aim to determine the locations of the major histone modifications across the Drosophila melanogaster genome. The modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using genomic tiling arrays. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Cell Line: Kc167; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Genotype: se/e; Sex: Female; NUMBER OF REPLICATES: 4; EXPERIMENTAL FACTORS: Cell Line Kc167; Antibody H4K8ac (target is H4K8ac)
Web link http://www.modencode.org
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
 
Contributor(s) Karpen G, Elgin S, Gortchakov A, Shanower G, Tolstorukov M, Kharchenko P, Kuroda M, Pirrotta V, Park P, Minoda A, Riddle N, Schwartz Y, Alekseyenko A, Kennedy C
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63467
Submission date Oct 11, 2011
Last update date Jul 08, 2015
Contact name DCC modENCODE
E-mail help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL6629 [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array
Samples (4)
GSM811864 expt.1245 extraction1_array1
GSM811865 expt.1113 extraction2_array1
GSM811866 expt.1246 extraction3_array1

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE32758_1245.Mvalues.bedgraph.gz 41.0 Mb (ftp)(http) BEDGRAPH
GSE32758_1246.Mvalues.bedgraph.gz 41.1 Mb (ftp)(http) BEDGRAPH
GSE32758_RAW.tar 100.6 Mb (http)(custom) TAR (of CEL)
GSE32758_repset.9703851.smoothedM.bedgraph.gz 41.5 Mb (ftp)(http) BEDGRAPH
GSE32758_repset.9703851.smoothedM.clusters.gff3.gz 113.8 Kb (ftp)(http) GFF3
Raw data provided as supplementary file
Processed data is available on Series record

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