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Series GSE32742 Query DataSets for GSE32742
Status Public on Oct 13, 2011
Title HP1c (MO 462).D.mel 3rd Instar Larvae Nuclei
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary modENCODE_submission_3023
This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We aim to determine the locations of the major histone modifications across the Drosophila melanogaster genome. The modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using genomic tiling arrays. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: 3rd Instar Larvae; Genotype: wild type; NUMBER OF REPLICATES: 4; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Antibody HP1c (MO 462) (target is HP1c); Developmental Stage 3rd Instar Larvae
Web link http://www.modencode.org
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
 
Contributor(s) Karpen G, Elgin S, Gortchakov A, Shanower G, Tolstorukov M, Kharchenko P, Kuroda M, Pirrotta V, Park P, Minoda A, Riddle N, Schwartz Y, Alekseyenko A, Kennedy C
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63463
Submission date Oct 11, 2011
Last update date Jul 08, 2015
Contact name DCC modENCODE
E-mail help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL6629 [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array
Samples (4)
GSM811796 expt.877 extraction1_array1
GSM811797 expt.799 extraction2_array1
GSM811798 expt.876 extraction3_array1

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE32742_876.Mvalues.bedgraph.gz 40.9 Mb (ftp)(http) BEDGRAPH
GSE32742_877.Mvalues.bedgraph.gz 41.0 Mb (ftp)(http) BEDGRAPH
GSE32742_RAW.tar 100.2 Mb (http)(custom) TAR (of CEL)
GSE32742_repset.9276757.smoothedM.bedgraph.gz 41.6 Mb (ftp)(http) BEDGRAPH
GSE32742_repset.9276757.smoothedM.clusters.gff3.gz 151.6 Kb (ftp)(http) GFF3
Raw data provided as supplementary file
Processed data is available on Series record

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