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Series GSE32264 Query DataSets for GSE32264
Status Public on Feb 01, 2012
Title NCI60 Affy500K Profiling
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Comparison between cell lines from 9 different cancer tissue of origin types (Breast, Central Nervous System, Colon, Leukemia, Melanoma, Non-Small Cell Lung, Ovarian, Prostate, Renal) from NCI-60 panel
Overall design Runs of homozygosity analysis was done for 63 cell lines by both dChip basic-HMM method and PLINK ROH module
Contributor(s) Xiaoyang R, William R
Citation(s) 22347499
Submission date Sep 20, 2011
Last update date May 17, 2017
Contact name xiaoyang ruan
Organization name Mayo Clinic
Department Health Science Research
Lab Natural Language Processing
Street address 200 1st Street
City Rochester
State/province MN
ZIP/Postal code 55905
Country USA
Platforms (2)
GPL3718 [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array
GPL3720 [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array
Samples (126)
GSM799318 Breast cell line BT_549-250K_Nsp
GSM799319 Breast cell line HS578T-250K_Nsp
GSM799320 Breast cell line MCF7-250K_Nsp
BioProject PRJNA147337

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE32264_NCI-60_ROH_NSP_dChip.txt.gz 2.8 Mb (ftp)(http) TXT
GSE32264_NCI-60_ROH_PLINK_coverted.txt.gz 3.2 Mb (ftp)(http) TXT
GSE32264_NCI-60_ROH_PLINK_rawData.txt.gz 876.0 Kb (ftp)(http) TXT
GSE32264_NCI-60_ROH_STY_dChip.txt.gz 2.5 Mb (ftp)(http) TXT
GSE32264_RAW.tar 3.2 Gb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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