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| Status |
Public on Sep 01, 2013 |
| Title |
tnni2 Binding Genome Seqences |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
ChIP-Seq analysis of the potential accumulated binding sites on whole genome by wild-type tnni2 and tnni2 del175k mutant
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| Overall design |
The primary osteoblasts from Tnni2del175k/175k mice and wild-type littermates (n=3) were cultured for ChIP-Seq. ChIP and construct libraries were performed using the antibody against tnni2 (Santa Cluz Biotechnology) and conducted as previously described above. Illumina HiSeq 2000 is used for sequencing. Raw reads were aligned with the mouse reference 8 using Bowtie software and viewed with the IGV browser.
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| Contributor(s) |
zhu x, gao s, yang Z |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Sep 15, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
xiaoquan zhu |
| E-mail(s) |
zxq_gy@yahoo.com.cn
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| Organization name |
beijing hospital
|
| Street address |
N01 dahua road dongdan beijing
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| City |
beijing |
| ZIP/Postal code |
100730 |
| Country |
China |
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| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE32401 |
Tnni2del175k mutant mice and their wild-type littermates using mRNA array and ChIP-seq |
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| Relations |
| SRA |
SRP008507 |
| BioProject |
PRJNA154869 |
