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Series GSE31012 Query DataSets for GSE31012
Status Public on Sep 13, 2012
Title RNA-seq of Pacific oyster Crassostrea gigas under different developmental stages and stress treatments
Organism Crassostrea gigas
Experiment type Expression profiling by high throughput sequencing
Summary Deep sequencing of samples from different development stages, different adult organs and different stress treatments of Pacific oyster Crassostrea gigas
 
Overall design Samples of 38 developmental stages from egg to juvenile were analyzed using single-end 49 bp RNA-seq. Two libraries mixed by RNAs from different developmental stages were analyzed using paired-end 90 bp RNA-seq. A total of 11 samples mainly from 8 organs (mantle, gill,adductor muscle, digestive gland, hemocyte, labial palp, female gonad and male gonad) were analyzed using paired-end 90 bp RNA-seq. At the same time, single-end 49 bp RNA-seq was conducted on 61 samples collected from adult oysters subjected to 9 types of environmental stressors (exposure to air, salinity, temperature, and exposure to metals).
 
Contributor(s) Zhang G, Fang X, Li L, Xu F, Wang X, Zhang L
Citation(s) 22992520
Submission date Jul 28, 2011
Last update date May 23, 2013
Contact name Fei Xu
E-mail xufei@qdio.ac.cn
Phone +86-13791940813
Organization name Institute of Oceanology, Chinese Academy of Sciences
Street address 7 Nanhai Road
City Qingdao
ZIP/Postal code 266071
Country China
 
Platforms (1)
GPL13986 Illumina HiSeq 2000 (Crassostrea gigas)
Samples (112)
GSM768396 Man1
GSM768397 Dgl
GSM768398 Fgo
Relations
BioProject PRJNA146329
SRA SRP014559

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31012_RAW.tar 6.5 Gb (http)(custom) TAR (of BEDGRAPH)

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