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Series GSE30943 Query DataSets for GSE30943
Status Public on Feb 10, 2012
Title Genome-wide profiling of gene expression of normal and Tbx20 knockout adult mouse whole heart
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Tbx20 is a transcription factor important for heart development. To assess the role of Tbx20 in the adult heart, we generated a conditional knockout for this gene, specifically in cardiomyocytes. We profiled gene expression levels using RNA-seq in both normal and knockout adult mouse hearts to identify genes and pathways regulated by Tbx20. The article describing the Tbx20 knockout mouse is under review, a reference will be added when published.
 
Overall design Analysis of triplicate mRNA samples of adult mouse, comparing normal and knockout
 
Contributor(s) Aneas I, Sakabe NJ, Nobrega MA, Shen T, Evans S
Citation(s) 22328084
Submission date Jul 26, 2011
Last update date Mar 08, 2019
Contact name Noboru Jo Sakabe
Organization name University of Chicago
Department Human Genetics
Street address 920 E 58th st
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
 
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (10)
GSM734426 Tbx20 (fused to GFP) ChIP-seq
GSM734427 whole heart input 1
GSM734428 whole heart input 2
Relations
SRA SRP007579
BioProject PRJNA146301

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30943_RAW.tar 70.0 Kb (http)(custom) TAR (of BED, TXT)
GSE30943_read_counts_per_gene.txt.gz 287.9 Kb (ftp)(http) TXT
Raw data are available in SRA
Processed data is available on Series record

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