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Series GSE30765 Query DataSets for GSE30765
Status Public on Aug 22, 2011
Title Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA-sequencing
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Here, we apply differential transcriptome analysis on microscopically isolated cell populations, to define five transcriptional programs that represent each transient embryonic zone and the progression between these zones. The five transcriptional programs contain largely uncharacterized genes in addition to transcripts necessary for stem cell maintenance, neurogenesis, migration, and differentiation. Additionally, we found intergenic transcriptionally active regions that possibly encode novel zone-specific transcripts. Finally, we present a high-resolution transcriptome map of transient zones in the embryonic mouse forebrain.
 
Overall design mRNAseq performed after laser microdissection of cells from transient embryonic zones in the mouse cortex
Web link http://rakiclab.med.yale.edu/transcriptome.php
 
Contributor(s) Ayoub AE, Oh S, Xie Y, Leng J, Cotney J, Dominguez MH, Noonan JP, Rakic P
Citation(s) 21873192
Submission date Jul 18, 2011
Last update date Jun 21, 2017
Contact name Albert E. Ayoub
E-mail albert.ayoub@yale.edu
Organization name Yale University
Department Neurobiology
Street address 333 Cedar St. SHM C317
City New Haven
State/province CT
ZIP/Postal code 06460
Country USA
 
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (12)
GSM763476 CP-1-1
GSM763477 CP-1-2
GSM763478 SVZ-IZ-1-1
Relations
SRA SRP007510
BioProject PRJNA144333

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30765_CP-1_merged.bw 246.4 Mb (ftp)(http) BW
GSE30765_CP-2_merged.bw 265.0 Mb (ftp)(http) BW
GSE30765_RAW.tar 5.6 Gb (http)(custom) TAR (of SAM)
GSE30765_SVZ-IZ-1_merged.bw 213.9 Mb (ftp)(http) BW
GSE30765_SVZ-IZ-2_merged.bw 247.2 Mb (ftp)(http) BW
GSE30765_VZ-1_merged.bw 217.5 Mb (ftp)(http) BW
GSE30765_VZ-2_merged.bw 258.9 Mb (ftp)(http) BW
Raw data are available in SRA
Processed data provided as supplementary file

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