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| Status |
Public on Jul 14, 2011 |
| Title |
[E-MTAB-444] Transcription profiling by high throughput sequencing of Cleome gynandra developing and mature leaves |
| Organism |
Gynandropsis gynandra |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Cleome gynandra leaf development RNA-seq
RNA-seq have been performed on developing (2mm length) and mature (10mm length) leaves of the C4 photosynthesis plant Cleome gynandra. 6 runs of Illumina 36-42 bp single end have been performed
ArrayExpress Release Date: 2010-12-01
Publication Author List: Sylvain Aubry, Mali Salmon, Kim M Rutherford, Paul Bertone, Andrea Brautigam, Andreas PM Weber, Krystyna A Kelly, Julian M Hibberd
Publication Title: De novo transcriptome assembly enables quantitative expression analysis in non-sequenced model organisms
Person Roles: submitter
Person Last Name: Aubry
Person First Name: Sylvain
Person Mid Initials:
Person Email: sa530@cam.ac.uk
Person Phone: +441223 330 220
Person Address: Department of Plant Sciences. University of Cambridge. Downing Street. CB2 3EA Cambridge
Person Affiliation: University of Cambridge
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| |
|
| Overall design |
Experimental Design: development_or_differentiation_design
Experimental Factor Name: DEVELOPMENTALSTAGE
Experimental Factor Type: developmental_stage
Quality Control Type: biological_replicates
|
| |
|
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jul 12, 2011 |
| Last update date |
Mar 23, 2012 |
| Organization |
European Bioinformatics Institute |
| E-mail |
miamexpress@ebi.ac.uk
|
| Lab |
ArrayExpress
|
| Street address |
Wellcome Trust Genome Campus
|
| City |
Hinxton |
| State/province |
Cambridgeshire |
| ZIP/Postal code |
CB10 1SD |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL13890 |
Illumina Genome Analyzer II (Cleome gynandra) |
|
| Samples (6)
|
|
| Relations |
| SRA |
ERP000399 |
| ArrayExpress |
E-MTAB-444 |
| BioProject |
PRJNA144505 |
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