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Series GSE30605 Query DataSets for GSE30605
Status Public on Jul 14, 2011
Title [E-MTAB-444] Transcription profiling by high throughput sequencing of Cleome gynandra developing and mature leaves
Organism Gynandropsis gynandra
Experiment type Expression profiling by high throughput sequencing
Summary Cleome gynandra leaf development RNA-seq
RNA-seq have been performed on developing (2mm length) and mature (10mm length) leaves of the C4 photosynthesis plant Cleome gynandra. 6 runs of Illumina 36-42 bp single end have been performed

ArrayExpress Release Date: 2010-12-01
Publication Author List: Sylvain Aubry, Mali Salmon, Kim M Rutherford, Paul Bertone, Andrea Brautigam, Andreas PM Weber, Krystyna A Kelly, Julian M Hibberd

Publication Title: De novo transcriptome assembly enables quantitative expression analysis in non-sequenced model organisms

Person Roles: submitter
Person Last Name: Aubry
Person First Name: Sylvain
Person Mid Initials:
Person Email: sa530@cam.ac.uk
Person Phone: +441223 330 220
Person Address: Department of Plant Sciences. University of Cambridge. Downing Street. CB2 3EA Cambridge
Person Affiliation: University of Cambridge
 
Overall design Experimental Design: development_or_differentiation_design
Experimental Factor Name: DEVELOPMENTALSTAGE
Experimental Factor Type: developmental_stage
Quality Control Type: biological_replicates
 
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Submission date Jul 12, 2011
Last update date Mar 23, 2012
Organization European Bioinformatics Institute
E-mail miamexpress@ebi.ac.uk
Lab ArrayExpress
Street address Wellcome Trust Genome Campus
City Hinxton
State/province Cambridgeshire
ZIP/Postal code CB10 1SD
Country United Kingdom
 
Platforms (1)
GPL13890 Illumina Genome Analyzer II (Cleome gynandra)
Samples (6)
GSM759442 [E-MTAB-444] O3
GSM759443 [E-MTAB-444] O2
GSM759444 [E-MTAB-444] Y3
Relations
SRA ERP000399
ArrayExpress E-MTAB-444
BioProject PRJNA144505

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
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Supplementary data files not provided
Processed data not provided for this record
Raw data are available in SRA

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