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Series GSE30400 Query DataSets for GSE30400
Status Public on Jul 09, 2011
Title RNA-Seq in GM12878 (ENCODE Project)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We performed RNA-Seq as part of the ENCODE project in order to determine sites of allele-specific expression This was done in the GM12878 cell line which was genotyped as part of the pilot II phase of the 1000 genomes project. There is a matching ChIP-Seq experiments for a number of transcription factors were also performed on the same cell line.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design Transcriptome mapping using RNA-Seq for GM12878
Web link http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
 
Contributor(s) Rozowsky J, Raha D, Snyder M, Gerstein M
Citation(s) 21811232
BioProject PRJNA30709
Submission date Jul 05, 2011
Last update date Dec 03, 2018
Contact name Joel Rozowsky
E-mail rozowsky@csb.yale.edu
Phone 203-432-5405
Organization name Yale University
Department Molecular Biophysics & Biochemistry
Lab Gerstein Lab
Street address 266 Whitney Ave, Bass 437
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platforms (1)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (1)
GSM754335 RNA-Seq
This SubSeries is part of SuperSeries:
GSE30401 AlleleSeq: Analysis of Allele-Specific Expression and Binding in a Network Framework
Relations
SRA SRP007417

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30400_RAW.tar 10.7 Gb (http)(custom) TAR (of BAM)
Raw data are available in SRA
Processed data provided as supplementary file

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