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Series GSE29163 Query DataSets for GSE29163
Status Public on May 10, 2011
Title Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle
Organism Glycine max
Experiment type Expression profiling by high throughput sequencing
Summary We report the genome-wide transcriptome of soybean seeds across several stages of seed development and the entire life cycle using Illumina high-throughput sequencing technology. Specifically, we profiled whole seeds containing globular-stage, heart-stage, cotyledon-stage, early maturation-stage, mid-maturation-stage, and late-maturation-stage embryos. We also profiled dry soybean seeds, and vegetative and reproductive tissues including leaves, roots, stems, seedlings, and floral buds.
Overall design IIllumina sequencing of transcripts from whole seeds at five stages of seed development (globular, heart, cotyledon, early-maturation, mid-maturation, late-maturation, dry), and vegetative (leaves, roots, stems, seedlings) and reproductive (floral buds) tissues.
Contributor(s) Goldberg RB, Le BH, Henry KF, Bui AQ, Wu X, Chen M
Citation(s) 25963149, 29078418
Submission date May 09, 2011
Last update date Jul 19, 2019
Contact name Bob Goldberg
Phone 310-825-3270
Organization name University of California, Los Angeles
Department Molecular, Cell and Developmental Biology
Street address 610 Charles E Young Drive East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (12)
GSM721725 Globular Stage Whole Seed
GSM721726 Heart Stage Whole Seed
GSM721727 Cotyledon Stage Whole Seed
SRA SRP006767
BioProject PRJNA140081

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Supplementary file Size Download File type/resource
GSE29163_RAW.tar 3.1 Mb (http)(custom) TAR (of TXT)
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Raw data are available in SRA
Processed data provided as supplementary file

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