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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 10, 2011 |
| Title |
Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle |
| Organism |
Glycine max |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We report the genome-wide transcriptome of soybean seeds across several stages of seed development and the entire life cycle using Illumina high-throughput sequencing technology. Specifically, we profiled whole seeds containing globular-stage, heart-stage, cotyledon-stage, early maturation-stage, mid-maturation-stage, and late-maturation-stage embryos. We also profiled dry soybean seeds, and vegetative and reproductive tissues including leaves, roots, stems, seedlings, and floral buds.
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| Overall design |
IIllumina sequencing of transcripts from whole seeds at five stages of seed development (globular, heart, cotyledon, early-maturation, mid-maturation, late-maturation, dry), and vegetative (leaves, roots, stems, seedlings) and reproductive (floral buds) tissues.
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| Contributor(s) |
Goldberg RB, Le BH, Henry KF, Bui AQ, Wu X, Chen M |
| Citation(s) |
25963149, 29078418 |
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| Submission date |
May 09, 2011 |
| Last update date |
Jul 19, 2019 |
| Contact name |
Bob Goldberg |
| E-mail(s) |
bobglab@mcdb.ucla.edu
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| Phone |
310-825-3270
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| Organization name |
University of California, Los Angeles
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| Department |
Molecular, Cell and Developmental Biology
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| Street address |
610 Charles E Young Drive East
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| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
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| Platforms (1) |
| GPL15008 |
Illumina HiSeq 2000 (Glycine max) |
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| Samples (12)
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| Relations |
| SRA |
SRP006767 |
| BioProject |
PRJNA140081 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE29163_RAW.tar |
3.1 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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