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Series GSE29162 Query DataSets for GSE29162
Status Public on May 10, 2011
Title Transcript Profiling of Soybean Seed Compartments Using Laser Capture Microdissection Coupled With RNA-Seq
Organism Glycine max
Experiment type Expression profiling by high throughput sequencing
Summary We used laser capture microdissection (LCM) to capture soybean seed compartments and profiled the transcriptomes of several compartments using next-generation sequencing. We profiled the transcriptomes of the embryo-proper and the suspensor region from globular stage embryos and the seed coat parenchyma layer of early maturation stage seeds using the Illumina GAIIx system.
Overall design Illumina sequencing of transcripts from laser-captured embryo proper and suspensor of globular stage embryo and seed coat parenchyma layer of the early maturation stage seed.
Contributor(s) Goldberg RB, Le BH, Henry KF, Kawashima T
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Submission date May 09, 2011
Last update date May 15, 2019
Contact name Bob Goldberg
Phone 310-825-3270
Organization name University of California, Los Angeles
Department Molecular, Cell and Developmental Biology
Street address 610 Charles E Young Drive East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
Platforms (1)
GPL11192 Illumina Genome Analyzer II (Glycine max)
Samples (3)
GSM721717 Globular-stage embryo proper region
GSM721718 Globular-stage suspensor region
GSM721719 Early maturation-stage seed coat parenchyma region
SRA SRP006766
BioProject PRJNA140079

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Supplementary file Size Download File type/resource
GSE29162_RAW.tar 670.0 Kb (http)(custom) TAR (of TXT)
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Raw data are available in SRA
Processed data provided as supplementary file

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