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Series GSE2901 Query DataSets for GSE2901
Status Public on Jan 01, 2006
Title cDNA array expression profile of wild-type and fl-mutant upland cotton ovules
Organism Gossypium hirsutum
Experiment type Expression profiling by array
Summary Comparison of gene expression profiles of wild-type and fl-mutant upland cotton ovules
Keywords: repeat samples
 
Overall design Data for six replicate experiments performed with biologically independent samples.
Cy3 and Cy5 dyes were used as follows:
Set 1: wt+5-Cy5 wt+3-Cy3
Set 1 (dye swap): wt+5-Cy3 wt+3-Cy5
Set 2: wt+5-Cy5 wt+3-Cy3
Set 2 (dye swap): wt+5-Cy3 wt+3-Cy5
Set 3: wt+5-Cy5 wt+3-Cy3
Set 3 (dye swap): wt+5-Cy3 wt+3-Cy5

GSM63341, GSM63342, GSM63343, GSM63344, GSM63345, GSM63346

Data for 3 replicate experiments performed with biologically independent samples.
Cy3 and Cy5 dyes were used as follows:
Set 1: wt+3-Cy5 vs wt+3-Cy3
Set 2: wt+3-Cy3 vs wt+3-Cy5
Set 3: wt+3-Cy5 vs wt+3-Cy3

GSM63365, GSM63366, GSM63367

Data for six replicate experiments performed with biologically independent samples.
Cy3 and Cy5 dyes were used as follows:
Set 1: wt+3-Cy5 wt-3-Cy3
Set 1 (dye swap): wt+3-Cy3 wt-3-Cy5
Set 2: wt+3-Cy5 wt-3-Cy3
Set 2 (dye swap): wt+3-Cy3 wt-3-Cy5
Set 3: wt+3-Cy5 wt-3-Cy3
Set 3 (dye swap): wt+3-Cy3 wt-3-Cy5

GSM63368, GSM63369, GSM63370, GSM63371, GSM63372, GSM63373

Data for six replicate experiments performed with biologically independent samples.
Cy3 and Cy5 dyes were used as follows:
Set 1: 0wt-Cy5 wt+3-Cy3
Set 1 (dye swap): 0wt-Cy3 wt+3-Cy5
Set 2: 0wt-Cy5 wt+3-Cy3
Set 2 (dye swap): 0wt-Cy3 wt+3-Cy5
Set 3: 0wt-Cy5 wt+3-Cy3
Set 3 (dye swap): 0wt-Cy3 wt+3-Cy5

GSM63374, GSM63375, GSM63376, GSM63377, GSM63378, GSM63379

Data for six replicate experiments performed with biologically independent samples.
Cy3 and Cy5 dyes were used as follows:
Set 1: wt+3-Cy5 fl+3-Cy3
Set 1 (dye swap): wt+3-Cy3 fl+3-Cy5
Set 2: wt+3-Cy5 fl+3-Cy3
Set 2 (dye swap): wt+3-Cy3 fl+3-Cy5
Set 3: wt+3-Cy5 fl+3-Cy3
Set 3 (dye swap): wt+3-Cy3 fl+3-Cy5

GSM63391, GSM63392, GSM63393, GSM63394, GSM63395, GSM63396

Data for six replicate experiments performed with biologically independent samples.
Cy3 and Cy5 dyes were used as follows:
Set 1: wt+10-Cy5 fl+10-Cy3
Set 1 (dye swap): wt+10-Cy3 fl+10-Cy5
Set 2: wt+10-Cy5 fl+10-Cy3
Set 2 (dye swap): wt+10-Cy3 fl+10-Cy5
Set 3: wt+10-Cy5 fl+10-Cy3
Set 3 (dye swap): wt+10-Cy3 fl+10-Cy5

GSM63397, GSM63398, GSM63399, GSM63400, GSM63401, GSM63402

Data for six replicate experiments performed with biologically independent samples.
Cy3 and Cy5 dyes were used as follows:
Set 1: wt+10-Cy5 wt+3-Cy3
Set 1 (dye swap): wt+10-Cy3 wt+3-Cy5
Set 2: wt+10-Cy5 wt+3-Cy3
Set 2 (dye swap): wt+10-Cy3 wt+3-Cy5
Set 3: wt+10-Cy5 wt+3-Cy3
Set 3 (dye swap): wt+10-Cy3 wt+3-Cy5

GSM63403, GSM63404, GSM63405, GSM63406, GSM63407, GSM63408

Data for six replicate experiments performed with biologically independent samples.
Cy3 and Cy5 dyes were used as follows:
Set 1: wt+15-Cy5 wt+3-Cy3
Set 1 (dye swap): wt+15-Cy3 wt+3-Cy5
Set 2: wt+15-Cy5 wt+3-Cy3
Set 2 (dye swap): wt+15-Cy3 wt+3-Cy5
Set 3: wt+15-Cy5 wt+3-Cy3
Set 3 (dye swap): wt+15-Cy3 wt+3-Cy5

GSM63409, GSM63410, GSM63411, GSM63412, GSM63413, GSM63414

Data for six replicate experiments performed with biologically independent samples.
Cy3 and Cy5 dyes were used as follows:
Set 1: wt+20-Cy5 wt+3-Cy3
Set 1 (dye swap): wt+20-Cy3 wt+3-Cy5
Set 2: wt+20-Cy5 wt+3-Cy3
Set 2 (dye swap): wt+20-Cy3 wt+3-Cy5
Set 3: wt+20-Cy5 wt+3-Cy3
Set 3 (dye swap): wt+20-Cy3 wt+3-Cy5

GSM63415, GSM63416, GSM63417, GSM63418, GSM63419, GSM63420
 
Contributor(s) Shi Y, Zhang L, Cheng J, Zhu Y
Citation(s) 16461577
Submission date Jul 09, 2005
Last update date Mar 16, 2012
Contact name Yu-Xian Zhu
E-mail(s) zhuyx@water.pku.edu.cn
Phone 86-10-62751193
Fax 86-10-62754427
Organization name College of life sciences, Peking University
Lab National Lab of Protein Engineering & Plant Genetic Engineering
Street address 5# Summer Palace Road
City Beijing
ZIP/Postal code 100871
Country China
 
Platforms (1)
GPL2610 Upland Cotton Fiber-Specific cDNA Array
Samples (51)
GSM63341 cDNA array +5wt/+3wt set1
GSM63342 cDNA array +5wt/+3wt set1 (dye-swap)
GSM63343 cDNA array +5wt/+3wt set2
Relations
BioProject PRJNA92599

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided

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