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Series GSE287236 Query DataSets for GSE287236
Status Public on Jan 21, 2025
Title Replication Protein A1 is essential for DNA damage repair during mammalian oogenesis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Persistence of unrepaired DNA damage in oocytes is detrimental and may cause genetic aberrations, miscarriage, and infertility. RPA, an ssDNA-binding complex, is essential for various DNA-related processes. Here we report that RPA plays a novel role in DNA damage repair during postnatal oocyte development after meiotic recombination. To investigate the role of RPA during oogenesis, we inactivated RPA1 (replication protein A1), the largest subunit of the heterotrimeric RPA complex, specifically in oocytes using two germline-specific Cre drivers (Ddx4-Cre and Zp3-Cre). We find that depletion of RPA1 leads to the disassembly of the RPA complex, as evidenced by the absence of RPA2 and RPA3 in RPA1-deficient oocytes. Strikingly, severe DNA damage occurs in RPA1-deficient germinal vesicle (GV)-stage oocytes. Loss of RPA in oocytes triggered the canonical DNA damage response mechanisms and pathways, such as activation of ATM, ATR, DNA-PK, and p53. In addition, the RPA deficiency causes chromosome misalignment at metaphase I and metaphase II stages of oocytes, which is consistent with altered transcript levels of genes involved in cytoskeleton organization in RPA1-deficient oocytes. Absence of the RPA complex in oocytes severely impairs folliculogenesis and leads to a significant reduction in oocyte number and female infertility. Our results demonstrate that RPA plays an unexpected role in DNA damage repair during mammalian folliculogenesis.
 
Overall design Fully grown germinal vesicle (GV) oocytes were collected from PMSG-primed 4- to 5-week-old Control mice and Rpa1 oocyte-specific conditional knockout (OcKO) mice. Three biological replicates were prepared for each genotype (Control samples: 13, 14, 15; Rpa1 OcKO samples: 16, 17, 18) and each sample contained around 20 GV oocytes without any cumulus cells.
 
Contributor(s) Cui W
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Submission date Jan 16, 2025
Last update date Jan 21, 2025
Contact name Wei Cui
E-mail(s) wcui@umass.edu
Phone 413-545-0673
Organization name University of Massachusetts Amherst
Street address 240 Thatcher Road
City Amherst
State/province Massachusetts
ZIP/Postal code 01003
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM8741941 GV oocytes from Control mouse 1
GSM8741942 GV oocytes from Control mouse 2
GSM8741943 GV oocytes from Control mouse 3
Relations
BioProject PRJNA1211671

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE287236_RAW.tar 20.0 Mb (http)(custom) TAR (of TXT)
GSE287236_raw_counts.csv.gz 655.1 Kb (ftp)(http) CSV
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Raw data are available in SRA

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