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Series GSE28451 Query DataSets for GSE28451
Status Public on Oct 17, 2013
Title Conditional knockout of Sox2 in embryonic and trophoblast stem cells.
Organism Mus musculus
Experiment type Expression profiling by array
Summary To compare the transcriptional networks governed by Sox2 in embryonic stem (ES) cells and trophoblast stem (TS) cells, we performed whole-genome expression analysis after tetracycline (Tet)-induced knockout of Sox2 in each cell type.
 
Overall design A Tet-inducible Sox2 knockout ES cell line 2TS22C or its derivative TSC line 22CEROH2-TSC1 were treated with Tet for 4 days. A total of 12 samples from ES or TS cells cultured with or without Tet were analyzed in three biological replicates.
 
Contributor(s) Adachi K, Nikaido I, Ueda HR, Niwa H
Citation(s) 24120664
Submission date Apr 07, 2011
Last update date Mar 06, 2018
Contact name Itoshi NIKAIDO
E-mail(s) itoshi.nikaido@riken.jp
Organization name RIKEN
Department Center for Biosystems Dynamics Research
Lab Laboratory for Bioinformatics Research
Street address 2-1 Hirosawa
City Wako
State/province Saitama
ZIP/Postal code 351-0198
Country Japan
 
Platforms (1)
GPL6096 [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version]
Samples (12)
GSM703159 Sox2KO ESC Control biological rep1
GSM703160 Sox2KO ESC Control biological rep2
GSM703161 Sox2KO ESC Control biological rep3
This SubSeries is part of SuperSeries:
GSE28455 Sox2-regulatory networks in embryonic and trophoblast stem cells
Relations
BioProject PRJNA143237

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28451_RAW.tar 314.6 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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