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Series GSE283459 Query DataSets for GSE283459
Status Public on Dec 09, 2024
Title Incongruent end structures of leading and lagging telomeres dictate the nature of end replication problem
Organism Saccharomyces cerevisiae
Experiment type Other
Summary The end replication problem refers to the incomplete replication of parental DNA at telomeres, a process whose molecular depiction is hampered by the complex nature of telomere ends. Here we recapitulate this process using a synthetic de novo telomere in yeast and delineate distinct molecular fates of telomere ends in vivo. We show that the lagging strand telomere carries a ~10 nt 3’ overhang, while the leading strand telomere has a Yku-protected blunt end, which is prevalent on native telomeres. Moreover, we find that RNase H2 is mainly responsible for the removal of the last RNA primer. In the absence of RNase H2 activity, RNA primer retention on the lagging strand telomere attenuates telomere erosion and delays senescence in telomerase-null cells. These findings highlight incongruent end structures on telomeres and clarify that the primary culprit behind end replication problem is the incompletely replicated lagging strand telomere.
 
Overall design END-seq analysis of blunt ends on native telomeres
 
Contributor(s) Ye T, Yuan Q, Wu S, Zhao J, Wu Z, Liu J, Wu W, Zhou J
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Submission date Dec 04, 2024
Last update date Feb 26, 2025
Contact name Qingqing Yuan
E-mail(s) yuanqingqing2023@sibcb.ac.cn
Organization name CEMCS, CAS
Department SIBCB
Lab Wulab
Street address 320 Yueyang Road
City Shanghai
ZIP/Postal code 200031
Country China
 
Platforms (1)
GPL33987 DNBSEQ-T7 (Saccharomyces cerevisiae)
Samples (4)
GSM8662805 Yeast-G2M-WT-ExoIII-No-ExoVII-T_END-seq
GSM8662806 Yeast-G2M-WT-ExoVII-T_END-seq
GSM8662807 Yeast-G2M-WT-No-ExoVII-T_END-seq
Relations
BioProject PRJNA1193986

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Supplementary file Size Download File type/resource
GSE283459_RAW.tar 36.5 Mb (http)(custom) TAR (of BW)
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Raw data are available in SRA

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