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Series GSE283089 Query DataSets for GSE283089
Status Public on Jan 31, 2025
Title MFRP in the retina is a molecular hub that organizes the apical membrane of RPE cells by engaging in interactions with specific protein and lipid molecules
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Membrane frizzled-related protein (MFRP) is an integral membrane protein present in the retinal pigment epithelium (RPE) and is essential for ocular development and the physiology of the retina. Mutations in MFRP are associated with autosomal recessive non-syndromic nanophthalmos, leading to severe hyperopia and early-onset retinitis pigmentosa. While several preclinical gene augmentation and gene editing trials hold promise for future therapies aimed at stopping degeneration and restoring retinal function, the molecular mechanisms underlying MFRP biology remain largely undefined. Here, we studied the biochemical properties of MFRP and the molecular consequences of its loss in a mouse model. Using transcriptomic and lipidomic approaches, we observed that DHA accumulation constitutes a primary defect in the MFRP-deficient RPE. In biochemical assays, we showed that MFRP undergoes extensive glycosylation and preferentially binds several classes of lipids, including phosphatidylserine and phosphatidylinositol 4-phosphate, as well as several other transmembrane proteins, notably adiponectin receptor 1 (ADIPOR1) and inward rectifier potassium channel 13 (KCNJ13). Moreover, MFRP determines ADIPOR1 and KCNJ13 subcellular localization in the RPE in vivo. This feature is affected upon MFRP deficiency and can be restored by gene therapy approaches. Overall, our observations suggest that MFRP constitutes an important interaction hub within the apical membrane of RPE cells, essential for protein trafficking and subcellular localization within the RPE and lipid homeostasis within the entire retina.
 
Overall design RNA-seq profiling of RPE cells from 1 mo wt and retinal degeneration 6 (rd6) mice
 
Contributor(s) Tworak A, Palczewski K
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Submission date Nov 28, 2024
Last update date Jan 31, 2025
Contact name Aleksander Tworak
E-mail(s) atworak@uci.edu
Phone 2162558296
Organization name University of California Irvine
Department Ophthalmology
Street address 837 Health Sciences Rd
City Irvine
State/province CA
ZIP/Postal code 92617
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (12)
GSM8655800 RPE cells from 1mo rd6 mice - replicate 1
GSM8655801 RPE cells from 1mo rd6 mice - replicate 2
GSM8655802 RPE cells from 1mo rd6 mice - replicate 3
Relations
BioProject PRJNA1191850

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE283089_MFRP-results.csv.gz 3.6 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA

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