NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE28153 Query DataSets for GSE28153
Status Public on Apr 12, 2012
Title Psip1 ChIP using A300-847 antibody (Immunoprecipitates mainly p52 isoform of Psip1) Chip-chip from Mouse MEFs cells with H3K36me3, H3K4me3, Psip1 ChIP using A300-847 antibody
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary The p52 isoform of Psip1/Ledgf links histone H3K36 methylation and the regulation of alternative splicing.
Chromatin immunoprecipitation (ChIP) of Psip1 together with H3K36me3 and H3K4me3 and by ChIP-on-chip analysis demonstrated that, Like H3K36me3, Psip1 is enriched on exons of highly expressed genes,
 
Overall design Comparision of H3K36me3 and Psip1 binding sites on the expressed and non expressed genes.
 
Contributor(s) Marulasiddappa PM, Grimes GR, Bickmore WA
Citation(s) 22615581
Submission date Mar 24, 2011
Last update date May 29, 2012
Contact name Pradeepa M Madapura
E-mail(s) pmadap@essex.ac.uk
Organization name University of Essex, School of Biological Science
Lab Pradeepa Madapura
Street address Wivenhoe Park
City Colchester
State/province Essex
ZIP/Postal code CO4 3SQ
Country United Kingdom
 
Platforms (1)
GPL13276 NimbleGen Custom Mouse Hox Tiling Array
Samples (10)
GSM697402 Psip1 ChIP using A300-847 antibody (recognises p52 isoform of Psip1) rep1
GSM697403 Psip1 ChIP using A300-847 antibody (recognises p52 isoform of Psip1) rep2
GSM697404 Psip1 ChIP using A300-847 antibody (recognises p52 isoform of Psip1) rep3
Relations
BioProject PRJNA139395

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28153_RAW.tar 237.8 Mb (http)(custom) TAR (of PAIR)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap