|
| Status |
Public on Jun 30, 2011 |
| Title |
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Mapping250K_Nsp) |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
|
| Summary |
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling.
|
| |
|
| Overall design |
14 Samples
|
| |
|
| Contributor(s) |
Pinto D, MacDonald JR |
| Citation(s) |
21552272 |
| |
| Submission date |
Mar 22, 2011 |
| Last update date |
May 17, 2017 |
| Contact name |
Stephen W Scherer |
| E-mail(s) |
stephen.scherer@sickkids.ca
|
| Organization name |
The Hospital for Sick Children
|
| Department |
Genetics and Genomic Biology
|
| Street address |
686 Bay Street
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A4 |
| Country |
Canada |
| |
|
| Platforms (1) |
| GPL3718 |
[Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array |
|
| Samples (14)
|
| GSM696287 |
NA10851 rep1 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696288 |
NA12239 rep1 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696289 |
NA18576 rep1 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696290 |
NA18980 rep1 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696291 |
NA15510 rep1 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696292 |
NA10851 rep 2 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696293 |
NA12239 rep 2 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696294 |
NA18576 rep 2 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696295 |
NA18980 rep 2 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696296 |
NA15510 rep 2 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696297 |
NA10851 rep 3 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696298 |
NA12239 rep 3 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696299 |
NA18576 rep 3 genotyping at TCAG (Mapping250K_Nsp) |
| GSM696300 |
NA15510 rep 3 genotyping at TCAG (Mapping250K_Nsp) |
|
| This SubSeries is part of SuperSeries: |
| GSE25893 |
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants |
|
| Relations |
| BioProject |
PRJNA139691 |
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