|
| Status |
Public on Nov 30, 2024 |
| Title |
Developmental dynamics of sea urchin and sea star cis-regulation and the evolution of echinoderm genome organization - ATAC-seq |
| Organisms |
Strongylocentrotus purpuratus; Patiria miniata |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We identified conserved cis-regultaory elements based on their dynamic chromatin accessibility over the gastrula-larva stages
|
| |
|
| Overall design |
ATAC-seq assays in wild-type sea urchin whole embryos
|
| |
|
| Contributor(s) |
Magri M, Voronov D, Ranđelović J, Arnone M, Maeso I, Gómez-Skarmeta JL |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Oct 29, 2024 |
| Last update date |
Nov 30, 2024 |
| Contact name |
Marta Silvia Magri |
| E-mail(s) |
marta.s.magri@gmail.com
|
| Organization name |
Centro Andaluz de Biología del Desarrollo
|
| Street address |
Carretera de Utrera km1
|
| City |
Seville |
| ZIP/Postal code |
41013 |
| Country |
Spain |
| |
|
| Platforms (2) |
| GPL28450 |
Illumina HiSeq 4000 (Strongylocentrotus purpuratus) |
| GPL33874 |
Illumina HiSeq 4000 (Patiria miniata) |
|
| Samples (14)
|
| GSM8599819 |
ATAC-seq in sea urchin whole embryos at 11 hpf, replicate 1 |
| GSM8599820 |
ATAC-seq in sea urchin whole embryos at 11 hpf, replicate 2 |
| GSM8599821 |
ATAC-seq in sea urchin whole embryos at 24 hpf, replicate 1 |
| GSM8599822 |
ATAC-seq in sea urchin whole embryos at 24 hpf, replicate 2 |
| GSM8599823 |
ATAC-seq in sea urchin whole embryos at 66 hpf, replicate 1 |
| GSM8599824 |
ATAC-seq in sea urchin whole embryos at 66 hpf, replicate 2 |
| GSM8599825 |
ATAC-seq in sea urchin whole embryos at 72 hpf, replicate 1 |
| GSM8599826 |
ATAC-seq in sea urchin whole embryos at 72 hpf, replicate 2 |
| GSM8604235 |
ATAC-seq in sea star whole embryos at 24 hpf, replicate 1 |
| GSM8604236 |
ATAC-seq in sea star whole embryos at 24 hpf, replicate 2 |
| GSM8604237 |
ATAC-seq in sea star whole embryos at 66 hpf, replicate 1 |
| GSM8604238 |
ATAC-seq in sea star whole embryos at 66 hpf, replicate 2 |
| GSM8604239 |
ATAC-seq in sea star whole embryos at 90 hpf, replicate 1 |
| GSM8604240 |
ATAC-seq in sea star whole embryos at 90 hpf, replicate 2 |
|
| This SubSeries is part of SuperSeries: |
| GSE281904 |
Deep conservation of cis-regulatory elements and chromatin organization in echinoderms uncover ancestral regulatory features of animal genomes |
|
| Relations |
| BioProject |
PRJNA1179351 |
Less...
More...