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Series GSE27727 Query DataSets for GSE27727
Status Public on Mar 09, 2011
Title Lieb JL00006_ZFP1_N2_MXEMB
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary modENCODE_submission_2969
This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. Our 126 strategically selected targets include RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents. We will integrate information generated with existing knowledge on the biology of the targets and perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
Keywords: CHIP-chip
 
Overall design EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: Mixed Embryo; Genotype: wild type; Sex: mixed Male and Hermaphrodite population; NUMBER OF REPLICATES: 3; EXPERIMENTAL FACTORS: Developmental Stage Mixed Embryo; temp (temperature) 20 degree celsius; Antibody JL00006 ZFP1 (target is ZFP-1); Strain N2
Web link http://www.modencode.org
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
 
Contributor(s) Jensen M, Lieb J
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63461
Submission date Mar 07, 2011
Last update date Feb 02, 2015
Contact name DCC modENCODE
E-mail help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL8647 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1
Samples (3)
GSM686470 Hyb1 extraction1_array1
GSM686471 Hyb2 extraction2_array1
GSM686472 Hyb3 extraction3_array1

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE27727_JL00006_ZFP1_N2_MXEMB_1_2_4B_combined.peaks.gff.gz 83.2 Kb (ftp)(http) GFF
GSE27727_RAW.tar 362.0 Mb (http)(custom) TAR (of GFF, PAIR, WIG)
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data is available on Series record

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