NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE27468 Query DataSets for GSE27468
Status Public on Feb 24, 2011
Title Methylome analysis of 18 wild-type and mutant mouse ES, NP and MEF cells
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary The analysis of the 18 methylomes comprise 3 biological replicates of TDG+/- ES cells, 3 biological replicates of TDG-/- ES cells, 3 biological replicates of TDG+/- NP cells, 3 biological replicates of TDG-/- NP cells, 3 biological replicates of TDG+/+ MEF cells and 3 biological replicates of TDG-/- MEF cells.
 
Overall design Analysis of the 18 methylomes comprise 3 biological replicates of TDG+/- ES cells, 3 biological replicates of TDG-/- ES cells, 3 biological replicates of TDG+/- NP cells, 3 biological replicates of TDG-/- NP cells, 3 biological replicates of TDG+/+ MEF cells and 3 biological replicates of TDG-/- MEF cells
 
Contributor(s) Wilson G, Dharmi P, Saito Y, Cortazar D, Kunz C, Schär P, Beck S
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Feb 23, 2011
Last update date May 15, 2019
Contact name Gareth Wilson
E-mail gareth.wilson@ucl.ac.uk
Organization name UCL Cancer Institute
Street address 23 Huntley Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (18)
GSM678684 ESC TDG heterozygote 1
GSM678685 ESC TDG heterozygote 2
GSM678686 ESC TDG heterozygote 3
Relations
SRA SRP005934
BioProject PRJNA138437

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE27468_RAW.tar 48.6 Gb (http)(custom) TAR (of BAM)
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap