NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Reviewer access | Sign OutHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE271380 Query DataSets for GSE271380
Status Public on Aug 12, 2024
Title Prdm1 Positively Regulates Liver Group 1 ILCs Cancer Immune Surveillance and Preserves Functional Heterogeneity [RNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Group 1 innate lymphoid cells (ILCs) comprise conventional natural killer (cNK) cells and type 1 innate lymphoid cells (ILC1s). The main functions of liver cNK cells and ILC1s not only include directly killing target cells but also regulating local immune microenvironment of the liver through the secretion of cytokines. Uncovering the intricate mechanisms by which transcriptional factors regulate and influence the functions of liver cNK cells and ILC1s, particularly within the context of liver tumors, presents a significant opportunity to amplify the effectiveness of immunotherapies against liver malignancies. Using Ncr1-drived conditional knockout mouse model, our study reveals the regulatory role of Prdm1 in shaping the composition and maturation of cNK cells. Although Prdm1 did not affect the killing function of cNK cells in an in vivo cytotoxicity model, a significant increase in cancer metastasis was observed in Prdm1 knockout mice. Interferon-gamma (IFN-γ), granzyme B, and perforin secretion decreased significantly in Prdm1 deficient cNK cells and liver ILC1s. scRNA sequencing data also provided evidences that Prdm1 maintains functional subsets of cNK cells and liver ILC1s and facilitates communications between cNK cells, liver ILC1s and macrophages. The present study unveiled a novel regulatory mechanism of Prdm1 in cNK cells and liver ILC1s, showing promising potential for developing innovative immune therapy strategies against liver cancer.
 
Overall design RNA-seq of sorted control or Prdm1 knockout mouse splenic NK cells.
 
Contributor(s) He J, Gao L, Wang P, Wang Y
Citation(s) 39133873
Submission date Jul 03, 2024
Last update date Sep 11, 2024
Contact name Youwei Wang
E-mail(s) youwei.wang@tju.edu
Organization name Tianjin University
Department Medical College
Street address 92 Weijin Road
City Tianjin
State/province --- Select One ---
ZIP/Postal code 300072
Country China
 
Platforms (1)
GPL23479 BGISEQ-500 (Mus musculus)
Samples (6)
GSM8375837 Prdm1-WT_C1
GSM8375838 Prdm1-WT_C2
GSM8375839 Prdm1-WT_C3
Relations
BioProject PRJNA1131273

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE271380_Prdm1_bulk_sequencing.txt.gz 693.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap