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Series GSE270518 Query DataSets for GSE270518
Status Public on Jun 24, 2024
Title Immunological memory diversity in the human upper airway
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary Limited CITE-seq antibody panel and 5' gene expression profiling of human nasopharyngeal cells collected with flocked swabs, paired with TCR and BCR sequencing of NP lymphocytes. FACS-sorted SARS-CoV-2 antigen-specific memory B and T cells with 5' gene expression profiling and scBCR and scTCRseq.
 
Overall design 10x Genomics 5' immune profiling using BioLegend TotalSeq-C TBNK, hashtag antibodies, and SARS-CoV-2 labeled probes.
Web link https://www.nature.com/articles/s41586-024-07748-8
 
Contributor(s) Crotty S, Ramirez SI, Faraji F
Citation(s) 39085605
NIH grant(s)
Grant ID Grant title Affiliation Name
U19 AI142742 Human immune memory to COVID-19, vaccines, and respiratory pathogens LA JOLLA INSTITUTE FOR IMMUNOLOGY Shane P Crotty
T32 AI007036 Combating Antibiotic Resistance Into the Next Generation (CARING) THE REGENTS OF THE UNIV. OF CALIF., UNIV. OF CALIF., SAN DIEGO Victor Nizet
Submission date Jun 24, 2024
Last update date Aug 04, 2024
Contact name Shane Crotty
Organization name La Jolla Institute for Immunology
Street address 9420 Athena Circle
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (201)
GSM8345886 4041 NP cells, GEX biol rep 1
GSM8345887 4041 NP cells, GEX biol rep 2
GSM8345888 4041 NP cells, CITE-seq biol rep 1
Relations
BioProject PRJNA1127438

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE270518_0124_CD4RE_GEX_barcodes.tsv.gz 10.8 Kb (ftp)(http) TSV
GSE270518_0124_CD4RE_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_0124_CD4RE_GEX_matrix.mtx.gz 14.0 Mb (ftp)(http) MTX
GSE270518_0124_CD8RE_GEX_barcodes.tsv.gz 744 b (ftp)(http) TSV
GSE270518_0124_CD8RE_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_0124_CD8RE_GEX_matrix.mtx.gz 175.2 Kb (ftp)(http) MTX
GSE270518_0126_CD4RE_GEX_barcodes.tsv.gz 26.6 Kb (ftp)(http) TSV
GSE270518_0126_CD4RE_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_0126_CD4RE_GEX_matrix.mtx.gz 22.4 Mb (ftp)(http) MTX
GSE270518_0126_CD8RE_GEX_barcodes.tsv.gz 2.3 Kb (ftp)(http) TSV
GSE270518_0126_CD8RE_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_0126_CD8RE_GEX_matrix.mtx.gz 1.2 Mb (ftp)(http) MTX
GSE270518_12_GEX_4236_CR-NS_1_barcodes.tsv.gz 87.9 Kb (ftp)(http) TSV
GSE270518_12_GEX_4236_CR-NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_12_GEX_4236_CR-NS_1_matrix.mtx.gz 106.7 Mb (ftp)(http) MTX
GSE270518_1_4202_MBC_GEX_barcodes.tsv.gz 6.9 Kb (ftp)(http) TSV
GSE270518_1_4202_MBC_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_1_4202_MBC_GEX_matrix.mtx.gz 9.0 Mb (ftp)(http) MTX
GSE270518_1_GEX_4041_CR-NS_1_barcodes.tsv.gz 46.6 Kb (ftp)(http) TSV
GSE270518_1_GEX_4041_CR-NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_1_GEX_4041_CR-NS_1_matrix.mtx.gz 58.9 Mb (ftp)(http) MTX
GSE270518_1_GEX_4041_CR-NS_2_barcodes.tsv.gz 44.8 Kb (ftp)(http) TSV
GSE270518_1_GEX_4041_CR-NS_2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_1_GEX_4041_CR-NS_2_matrix.mtx.gz 56.0 Mb (ftp)(http) MTX
GSE270518_1_GEX_4255_CR_NS_1_barcodes.tsv.gz 50.5 Kb (ftp)(http) TSV
GSE270518_1_GEX_4255_CR_NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_1_GEX_4255_CR_NS_1_matrix.mtx.gz 62.4 Mb (ftp)(http) MTX
GSE270518_1_GEX_4255_CR_NS_2_barcodes.tsv.gz 49.6 Kb (ftp)(http) TSV
GSE270518_1_GEX_4255_CR_NS_2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_1_GEX_4255_CR_NS_2_matrix.mtx.gz 66.8 Mb (ftp)(http) MTX
GSE270518_20240221_CD8_GEX2_barcodes.tsv.gz 10.9 Kb (ftp)(http) TSV
GSE270518_20240221_CD8_GEX2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_20240221_CD8_GEX2_matrix.mtx.gz 16.8 Mb (ftp)(http) MTX
GSE270518_20240221_CD8_GEX_barcodes.tsv.gz 10.9 Kb (ftp)(http) TSV
GSE270518_20240221_CD8_GEX_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_20240221_CD8_GEX_matrix.mtx.gz 14.5 Mb (ftp)(http) MTX
GSE270518_20240223_CD4_GEX2_barcodes.tsv.gz 31.6 Kb (ftp)(http) TSV
GSE270518_20240223_CD4_GEX2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_20240223_CD4_GEX2_matrix.mtx.gz 53.7 Mb (ftp)(http) MTX
GSE270518_20240223_CD4_GEX_barcodes.tsv.gz 30.6 Kb (ftp)(http) TSV
GSE270518_20240223_CD4_GEX_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_20240223_CD4_GEX_matrix.mtx.gz 45.9 Mb (ftp)(http) MTX
GSE270518_20240223_CD8_GEX2_barcodes.tsv.gz 16.1 Kb (ftp)(http) TSV
GSE270518_20240223_CD8_GEX2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_20240223_CD8_GEX2_matrix.mtx.gz 18.8 Mb (ftp)(http) MTX
GSE270518_20240223_CD8_GEX_barcodes.tsv.gz 16.0 Kb (ftp)(http) TSV
GSE270518_20240223_CD8_GEX_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_20240223_CD8_GEX_matrix.mtx.gz 16.5 Mb (ftp)(http) MTX
GSE270518_2_4379_MBC_GEX_barcodes.tsv.gz 6.3 Kb (ftp)(http) TSV
GSE270518_2_4379_MBC_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_2_4379_MBC_GEX_matrix.mtx.gz 10.5 Mb (ftp)(http) MTX
GSE270518_2_GEX_4093_CR_NS_1_barcodes.tsv.gz 57.5 Kb (ftp)(http) TSV
GSE270518_2_GEX_4093_CR_NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_2_GEX_4093_CR_NS_1_matrix.mtx.gz 63.4 Mb (ftp)(http) MTX
GSE270518_2_GEX_4093_CR_NS_2_barcodes.tsv.gz 34.5 Kb (ftp)(http) TSV
GSE270518_2_GEX_4093_CR_NS_2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_2_GEX_4093_CR_NS_2_matrix.mtx.gz 59.3 Mb (ftp)(http) MTX
GSE270518_3853_S_CD4_GEX_barcodes.tsv.gz 22.8 Kb (ftp)(http) TSV
GSE270518_3853_S_CD4_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_3853_S_CD4_GEX_matrix.mtx.gz 40.7 Mb (ftp)(http) MTX
GSE270518_3853_S_CD8_GEX_barcodes.tsv.gz 3.9 Kb (ftp)(http) TSV
GSE270518_3853_S_CD8_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_3853_S_CD8_GEX_matrix.mtx.gz 2.1 Mb (ftp)(http) MTX
GSE270518_3864_S_CD4_GEX2_barcodes.tsv.gz 19.5 Kb (ftp)(http) TSV
GSE270518_3864_S_CD4_GEX2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_3864_S_CD4_GEX2_matrix.mtx.gz 36.6 Mb (ftp)(http) MTX
GSE270518_3864_S_CD4_GEX_barcodes.tsv.gz 19.5 Kb (ftp)(http) TSV
GSE270518_3864_S_CD4_GEX_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_3864_S_CD4_GEX_matrix.mtx.gz 31.3 Mb (ftp)(http) MTX
GSE270518_3_4809_MBC_GEX_barcodes.tsv.gz 8.8 Kb (ftp)(http) TSV
GSE270518_3_4809_MBC_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_3_4809_MBC_GEX_matrix.mtx.gz 13.2 Mb (ftp)(http) MTX
GSE270518_3_GEX_4260_CR_NS_1_barcodes.tsv.gz 56.2 Kb (ftp)(http) TSV
GSE270518_3_GEX_4260_CR_NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_3_GEX_4260_CR_NS_1_matrix.mtx.gz 69.4 Mb (ftp)(http) MTX
GSE270518_3_GEX_4260_CR_NS_2_barcodes.tsv.gz 57.6 Kb (ftp)(http) TSV
GSE270518_3_GEX_4260_CR_NS_2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_3_GEX_4260_CR_NS_2_matrix.mtx.gz 72.5 Mb (ftp)(http) MTX
GSE270518_4041_S_CD4_GEX_barcodes.tsv.gz 5.5 Kb (ftp)(http) TSV
GSE270518_4041_S_CD4_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_4041_S_CD4_GEX_matrix.mtx.gz 6.3 Mb (ftp)(http) MTX
GSE270518_4041_S_CD8_GEX_barcodes.tsv.gz 7.4 Kb (ftp)(http) TSV
GSE270518_4041_S_CD8_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_4041_S_CD8_GEX_matrix.mtx.gz 8.8 Mb (ftp)(http) MTX
GSE270518_4093_S_CD4_GEX2_barcodes.tsv.gz 7.4 Kb (ftp)(http) TSV
GSE270518_4093_S_CD4_GEX2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4093_S_CD4_GEX2_matrix.mtx.gz 9.4 Mb (ftp)(http) MTX
GSE270518_4093_S_CD4_GEX_barcodes.tsv.gz 7.4 Kb (ftp)(http) TSV
GSE270518_4093_S_CD4_GEX_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4093_S_CD4_GEX_matrix.mtx.gz 7.6 Mb (ftp)(http) MTX
GSE270518_4258_S_CD4_GEX_barcodes.tsv.gz 15.2 Kb (ftp)(http) TSV
GSE270518_4258_S_CD4_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_4258_S_CD4_GEX_matrix.mtx.gz 17.7 Mb (ftp)(http) MTX
GSE270518_4258_S_CD8_GEX_barcodes.tsv.gz 2.5 Kb (ftp)(http) TSV
GSE270518_4258_S_CD8_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_4258_S_CD8_GEX_matrix.mtx.gz 656.8 Kb (ftp)(http) MTX
GSE270518_4260_S_CD4_1_GEX2_barcodes.tsv.gz 62.3 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_1_GEX2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_1_GEX2_matrix.mtx.gz 99.5 Mb (ftp)(http) MTX
GSE270518_4260_S_CD4_1_GEX_barcodes.tsv.gz 62.2 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_1_GEX_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_1_GEX_matrix.mtx.gz 78.3 Mb (ftp)(http) MTX
GSE270518_4260_S_CD4_2_GEX2_barcodes.tsv.gz 55.2 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_2_GEX2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_2_GEX2_matrix.mtx.gz 96.5 Mb (ftp)(http) MTX
GSE270518_4260_S_CD4_2_GEX_barcodes.tsv.gz 55.2 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_2_GEX_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_2_GEX_matrix.mtx.gz 77.6 Mb (ftp)(http) MTX
GSE270518_4260_S_CD4_3_GEX2_barcodes.tsv.gz 49.3 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_3_GEX2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_3_GEX2_matrix.mtx.gz 87.4 Mb (ftp)(http) MTX
GSE270518_4260_S_CD4_3_GEX_barcodes.tsv.gz 49.2 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_3_GEX_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4260_S_CD4_3_GEX_matrix.mtx.gz 70.8 Mb (ftp)(http) MTX
GSE270518_4447_S_CD4_GEX_barcodes.tsv.gz 21.2 Kb (ftp)(http) TSV
GSE270518_4447_S_CD4_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_4447_S_CD4_GEX_matrix.mtx.gz 33.9 Mb (ftp)(http) MTX
GSE270518_4447_S_CD8_GEX_barcodes.tsv.gz 4.4 Kb (ftp)(http) TSV
GSE270518_4447_S_CD8_GEX_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_4447_S_CD8_GEX_matrix.mtx.gz 3.3 Mb (ftp)(http) MTX
GSE270518_4_GEX_4301_CR-NS_1_barcodes.tsv.gz 15.5 Kb (ftp)(http) TSV
GSE270518_4_GEX_4301_CR-NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4_GEX_4301_CR-NS_1_matrix.mtx.gz 29.0 Mb (ftp)(http) MTX
GSE270518_4_GEX_4301_CR-NS_2_barcodes.tsv.gz 15.6 Kb (ftp)(http) TSV
GSE270518_4_GEX_4301_CR-NS_2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_4_GEX_4301_CR-NS_2_matrix.mtx.gz 27.8 Mb (ftp)(http) MTX
GSE270518_6_GEX_4206_CR_NS_1_barcodes.tsv.gz 9.7 Kb (ftp)(http) TSV
GSE270518_6_GEX_4206_CR_NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_6_GEX_4206_CR_NS_1_matrix.mtx.gz 12.2 Mb (ftp)(http) MTX
GSE270518_6_GEX_4206_CR_NS_2_barcodes.tsv.gz 9.6 Kb (ftp)(http) TSV
GSE270518_6_GEX_4206_CR_NS_2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_6_GEX_4206_CR_NS_2_matrix.mtx.gz 11.1 Mb (ftp)(http) MTX
GSE270518_6_GEX_4447_CR-NS_1_barcodes.tsv.gz 36.8 Kb (ftp)(http) TSV
GSE270518_6_GEX_4447_CR-NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_6_GEX_4447_CR-NS_1_matrix.mtx.gz 49.9 Mb (ftp)(http) MTX
GSE270518_6_GEX_4447_CR-NS_2_barcodes.tsv.gz 26.6 Kb (ftp)(http) TSV
GSE270518_6_GEX_4447_CR-NS_2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_6_GEX_4447_CR-NS_2_matrix.mtx.gz 41.8 Mb (ftp)(http) MTX
GSE270518_7_GEX_3864_CR_NS_1_barcodes.tsv.gz 53.9 Kb (ftp)(http) TSV
GSE270518_7_GEX_3864_CR_NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_7_GEX_3864_CR_NS_1_matrix.mtx.gz 90.8 Mb (ftp)(http) MTX
GSE270518_7_GEX_3864_CR_NS_2_barcodes.tsv.gz 50.1 Kb (ftp)(http) TSV
GSE270518_7_GEX_3864_CR_NS_2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_7_GEX_3864_CR_NS_2_matrix.mtx.gz 88.9 Mb (ftp)(http) MTX
GSE270518_7_GEX_4258_CR-NS_1_barcodes.tsv.gz 63.4 Kb (ftp)(http) TSV
GSE270518_7_GEX_4258_CR-NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_7_GEX_4258_CR-NS_1_matrix.mtx.gz 94.6 Mb (ftp)(http) MTX
GSE270518_8_GEX_3853_CR-NS_1_barcodes.tsv.gz 90.2 Kb (ftp)(http) TSV
GSE270518_8_GEX_3853_CR-NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_8_GEX_3853_CR-NS_1_matrix.mtx.gz 111.6 Mb (ftp)(http) MTX
GSE270518_9_GEX_4219_CR-NS_1_barcodes.tsv.gz 72.6 Kb (ftp)(http) TSV
GSE270518_9_GEX_4219_CR-NS_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_9_GEX_4219_CR-NS_1_matrix.mtx.gz 108.2 Mb (ftp)(http) MTX
GSE270518_GEX_CD4_barcodes.tsv.gz 16.0 Kb (ftp)(http) TSV
GSE270518_GEX_CD4_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_GEX_CD4_matrix.mtx.gz 3.9 Mb (ftp)(http) MTX
GSE270518_GEX_CD8_1_barcodes.tsv.gz 86.2 Kb (ftp)(http) TSV
GSE270518_GEX_CD8_1_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_GEX_CD8_1_matrix.mtx.gz 162.7 Mb (ftp)(http) MTX
GSE270518_GEX_CD8_2_barcodes.tsv.gz 92.4 Kb (ftp)(http) TSV
GSE270518_GEX_CD8_2_features.tsv.gz 325.7 Kb (ftp)(http) TSV
GSE270518_GEX_CD8_2_matrix.mtx.gz 163.7 Mb (ftp)(http) MTX
GSE270518_GEX_swab4202_barcodes.tsv.gz 58.7 Kb (ftp)(http) TSV
GSE270518_GEX_swab4202_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_GEX_swab4202_matrix.mtx.gz 138.6 Mb (ftp)(http) MTX
GSE270518_GEX_swab4809_barcodes.tsv.gz 102.9 Kb (ftp)(http) TSV
GSE270518_GEX_swab4809_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_GEX_swab4809_matrix.mtx.gz 186.7 Mb (ftp)(http) MTX
GSE270518_Hashtag_Key_All_sr.xlsx 11.4 Kb (ftp)(http) XLSX
GSE270518_RAW.tar 97.5 Mb (http)(custom) TAR (of CSV, FASTA)
GSE270518_Swab_4379_GEX_1_barcodes.tsv.gz 40.5 Kb (ftp)(http) TSV
GSE270518_Swab_4379_GEX_1_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_Swab_4379_GEX_1_matrix.mtx.gz 68.0 Mb (ftp)(http) MTX
GSE270518_Swab_4379_GEX_2_barcodes.tsv.gz 40.9 Kb (ftp)(http) TSV
GSE270518_Swab_4379_GEX_2_features.tsv.gz 325.8 Kb (ftp)(http) TSV
GSE270518_Swab_4379_GEX_2_matrix.mtx.gz 69.5 Mb (ftp)(http) MTX
GSE270518_feature_reference.csv.gz 800 b (ftp)(http) CSV
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