|
| Status |
Public on Dec 06, 2011 |
| Title |
Genome-wide maps of chromatin state in rice endosperm |
| Organism |
Oryza sativa |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report the application of single-molecule-based sequencing technology for high-throughput profiling of histone H3 trimethylation in rice endosperm. By obtaining about four hundred million bases of sequence from rice chromatin immunoprecipitated DNA, we generated genome-wide chromatin-state maps of rice endosperm. We find that the presence of H3K27me3 in either upstream or downstream of a gene is predominately associated with repression of the gene, while its absence is mainly associated with high gene expression.
|
| |
|
| Overall design |
Examination of Histone H3 lysine 27 trimethylation in rice endosperm.
|
| |
|
| Contributor(s) |
Li G, Tan F, Malone B, Peng Z |
| Citation(s) |
21984925, 23505380 |
| |
| Submission date |
Feb 03, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Feng Tan |
| E-mail(s) |
ft52@msstate.edu
|
| Phone |
662-325-3558
|
| Fax |
6623258664
|
| Organization name |
Mississippi State University
|
| Department |
Biochemistry and Molecular Biology
|
| Lab |
Peng's Lab
|
| Street address |
Dorman Hall 402
|
| City |
Mississippi State |
| State/province |
MS |
| ZIP/Postal code |
9762 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9147 |
Illumina Genome Analyzer (Oryza sativa) |
|
| Samples (2) |
|
| This SubSeries is part of SuperSeries: |
| GSE27064 |
Rice endosperm: mRNA profiling and H3K27me3 occupancy |
|
| Relations |
| SRA |
SRP005607 |
| BioProject |
PRJNA141937 |
