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Series GSE268765 Query DataSets for GSE268765
Status Public on Jan 15, 2025
Title Epigenetic changes cause aberrantly high expression of SOX11 leading to systemic sclerosis
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Systemic sclerosis (SSc) is a chronic, heterogenous multisystem connective tissue disease characterized by vascular injury, autoimmunity, and organ fibrosis. Epigenetic modification is thought to be important in the onset and progression of SSc. SOX (SRY-related HMG box) 11 is a transcription factor playing several important roles in organ development in embryos. We have previously shown that dermal fibroblasts derived from SSc patients showed constitutive, high expression of SOX11 and a positive loop formed by SOX11 and periostin in fibroblasts upregulates the TGF- signals, leading to skin fibrosis. However, the mechanism of the aberrant high expression of SOX11 remain unknown in the pathogenesis of SSc. In this study, we found that SOX11 high expression is associated with presence of activating histone marks (H3K27Ac) in SSc dermal fibroblasts. In contrast, normal fibroblasts express low level of SOX11 associated with silencing histone marks H3K27me3. Moreover, using the miRNA microarray method, we identified some miRNAs downregulated in SSc dermal fibroblasts and target SOX11 and overexpression of these miRNAs significantly repressed the expression of SOX11 in SSc dermal fibroblasts. Our findings, taken together, show that epigenetic activation of SOX11 in systemic sclerosis fibroblasts upregulates the SOX11 expression, leading to skin fibrosis.
 
Overall design We searched miRNAs differently expressed in normal and SSc dermal fibroblasts using microarray analysis and selected downregulated miRNAs in SSc dermal fibroblasts because miRNAs targeting the SOX11 gene are expected to downregulate its expression.
 
Contributor(s) Nanri Y, Izuhara K
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Submission date May 31, 2024
Last update date Jan 16, 2025
Contact name Yasuhiro Nanri
E-mail(s) sp9710@cc.saga-u.ac.jp
Phone +81-952-34-2261
Organization name Saga Medical School
Department Department of Biomolecular Sciences
Street address 5-1-1 Nabeshima
City Saga
ZIP/Postal code 849-8501
Country Japan
 
Platforms (1)
GPL25134 Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (miRNA ID version)
Samples (8)
GSM8298604 M30-1
GSM8298605 M30-2
GSM8298606 NDF5-1
Relations
BioProject PRJNA1118702

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE268765_RAW.tar 22.5 Mb (http)(custom) TAR (of TXT)

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