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| Status |
Public on Jul 29, 2024 |
| Title |
Effect of SAT1 depletion on H3K27ac alterations in the ovarian cancer cell line SKOV3 in detached conditions by chromatin immunoprecipitation and sequencing (ChIP-seq) analysis |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Ovarian cancer is an aggressive malignancy characterized by the ascitic fluid and peritoneal metastases. Cancer cells detach from the extracellular matrix and survives the loss of anchorage in the ascites to disseminate extensively in the peritoneal cavity. Metabolic reprogramming is often observed in the cancer progression, yet its role in peritoneal metastasis is largely unexplored. Here we report that spermidine/spermine N1-acetyltransferase 1 (SAT1) promotes the anchorage-independent cell survival and potentiates metastatic dissemination. Analysis of different histone modifications in the SAT1-depleted ovarian cancer cells upon detachment revealed only a dramatic reduction in the level of H3K27ac, whereas the levels of 15 other histone lysine modifications were not reduced or slightly affected. Chromatin immunoprecipitation and sequencing (ChIP-seq) analysis of H3K27ac to map gene regions with significantly altered H3K27ac identified 1870 genes with increased and 1556 genes with reduced H3K27ac peaks in SAT1-deficient ovarian cancer cells compared to control cells upon detachment.Integrated analysis of RNA-seq and H3K27ac ChIP-seq datasets indicated that 11.05% of genes with reduced H3K27ac peaks were transcriptionally down-regulated. Remarkably, such genes were broadly associated with mitotic cell cycle process, chromosome organization, and chromosome segregation.Taking these findings together, we conclude that SAT1 increases H3K27ac mark within genes required for mitosis regulation and chromosome segregation, thereby protecting ovarian cancer cells from mitotic catastrophe upon detachment.
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| Overall design |
To investigate effect of depletion of SAT1 on H27Kac alteration in the detached conditions, we knocked down SAT1 in ovarian cancer cell line SKOV3 by shRNA. We then perfromed comparative chromatin immunoprecipitation and sequencing (ChIP-seq) analysis of H3K27ac to map gene regions with significantly altered H3K27ac in the control (shControl) and SAT1 knockdown (shSAT1) cells.
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| Contributor(s) |
Zheng C, Li J, Pan C |
| Citation(s) |
40180916 |
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| Submission date |
May 16, 2024 |
| Last update date |
Apr 10, 2025 |
| Contact name |
Chaoyun Pan |
| E-mail(s) |
chaoyun.pan@outlook.com
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| Organization name |
Sun Yat-sen University
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| Street address |
74 Zhongshan Er Rd.
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| City |
Guangzhou |
| ZIP/Postal code |
510080 |
| Country |
China |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (8)
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| GSM8273307 |
SKOV3 cells, shControl, H3K27ac, ChIP, bio rep 1 |
| GSM8273308 |
SKOV3 cells, shControl, H3K27ac, ChIP, bio rep 2 |
| GSM8273309 |
SKOV3 cells, shControl, H3K27ac, ChIP, bio rep 3 |
| GSM8273310 |
SKOV3 cells, shControl,input |
| GSM8273311 |
SKOV3 cells, shSAT1, H3K27ac, ChIP, bio rep 1 |
| GSM8273312 |
SKOV3 cells, shSAT1, H3K27ac, ChIP, bio rep 2 |
| GSM8273313 |
SKOV3 cells, shSAT1, H3K27ac, ChIP, bio rep 3 |
| GSM8273314 |
SKOV3 cells, shSAT1,input |
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| Relations |
| BioProject |
PRJNA1112431 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE267703_RAW.tar |
951.0 Mb |
(http)(custom) |
TAR (of BW, CSV) |
SRA Run Selector |
| Raw data are available in SRA |
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