|
| Status |
Public on Dec 01, 2011 |
| Title |
Expression profile of nab2-1 mutant |
| Platform organisms |
Schizosaccharomyces pombe; Saccharomyces cerevisiae |
| Sample organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by array
|
| Summary |
Gene expression in eukaryotes is an essential process that includes transcription, pre-RNA processing and RNA export. All these steps are coupled and normally, any failure in one step affects the other steps and could cause nuclear mRNA retention. One important player in this interface is the poly(A)-RNA binding protein Nab2, which regulates the poly(A)-tail length of mRNAs protecting their 3’-ends from a second round of polyadenylation and facilitating their nucleo-cytoplasmic export. Interestingly, here we show that Nab2 has additional roles in mRNA transcription elongation, tRNA metabolism and rRNA export.
We use Genome-wide analysis of expression of nab2-1 mutant to demosntrate that the role of Nab2 in RNAPII transcription and RNAPIII metabolism is not the result of a secondary effect. Our results identify primary targets of nab2 revealing novel functions for Nab2 in transcription and metabolism of most types of RNAs, not only poly(A) mRNAs, indicating that Nab2 function is more ubiquitous than previously anticipated, being a central player in the general and coordinated control of gene expression from transcription elongation to translation initiation.
|
| |
|
| Overall design |
Three repeats of the wild type and nab2-1 mutant
|
| |
|
| Contributor(s) |
González-Aguiera C, Aguilera A |
| Citation(s) |
21680710 |
| |
| Submission date |
Dec 23, 2010 |
| Last update date |
Feb 21, 2017 |
| Contact name |
Cristina González-Aguilera |
| E-mail(s) |
cgonagu@upo.es, aguilo@us.es
|
| Organization name |
Universidad de Sevilla-CSIC/CABIMER
|
| Department |
Molecular Biology
|
| Street address |
Avda Américo Vespucio s/n
|
| City |
Sevilla |
| ZIP/Postal code |
41092 |
| Country |
Spain |
| |
|
| Platforms (1) |
| GPL2529 |
[Yeast_2] Affymetrix Yeast Genome 2.0 Array |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA135115 |
Less...
More...