|
| Status |
Public on Dec 15, 2011 |
| Title |
Late-stage embryonic gene expression in three cartilaginous fishes |
| Organisms |
Leucoraja erinacea; Scyliorhinus canicula; Callorhinchus milii |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Gene expression profiling of pooled late stage embryos from Leucoraja erinacea, Scyliorhinus canicula and Callorhinchus milii show that HOXC cluster genes are not expressed in the two elasmobranch fishes, L. erinacea and S. canicula. This finding supports the observations that these genes are not found in whole genome shotgun sequencing of L. erinacea or genomic clones from S. canicula.
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| |
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| Overall design |
Profile gene expression in pooled late stage embryos from three species (L. erinacea, S. canicula and C. milii)
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| |
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| Contributor(s) |
King BL, Gillis JA, Carlisle HR, Dahn RD |
| Citation(s) |
22174244 |
| Submission date |
Dec 21, 2010 |
| Last update date |
May 23, 2013 |
| Contact name |
Benjamin L King |
| E-mail |
benjamin.l.king@maine.edu
|
| Phone |
207-581-2803
|
| Organization name |
University of Maine
|
| Department |
Molecular and Biomedical Sciences
|
| Street address |
5735 Hitchner Hall
|
| City |
Orono |
| State/province |
ME |
| ZIP/Postal code |
04469 |
| Country |
USA |
| |
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| Platforms (3) |
| GPL11347 |
Illumina Genome Analyzer II (Leucoraja erinacea) |
| GPL11348 |
Illumina Genome Analyzer II (Scyliorhinus canicula) |
| GPL11349 |
Illumina Genome Analyzer II (Callorhinchus milii) |
|
| Samples (3) |
| GSM643957 |
Leucoraja erinacea pooled Stage 20-29 embryos |
| GSM643958 |
Scyliorhinus canicula pooled Stage 24-30 embryos |
| GSM643959 |
Callorhinchus milii pooled Stage 32 embryos |
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| Relations |
| SRA |
SRP004911 |
| BioProject |
PRJNA135005 |
