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Series GSE26235 Query DataSets for GSE26235
Status Public on Dec 15, 2011
Title Late-stage embryonic gene expression in three cartilaginous fishes
Organisms Leucoraja erinacea; Scyliorhinus canicula; Callorhinchus milii
Experiment type Expression profiling by high throughput sequencing
Summary Gene expression profiling of pooled late stage embryos from Leucoraja erinacea, Scyliorhinus canicula and Callorhinchus milii show that HOXC cluster genes are not expressed in the two elasmobranch fishes, L. erinacea and S. canicula. This finding supports the observations that these genes are not found in whole genome shotgun sequencing of L. erinacea or genomic clones from S. canicula.
 
Overall design Profile gene expression in pooled late stage embryos from three species (L. erinacea, S. canicula and C. milii)
 
Contributor(s) King BL, Gillis JA, Carlisle HR, Dahn RD
Citation(s) 22174244
Submission date Dec 21, 2010
Last update date May 23, 2013
Contact name Benjamin L King
E-mail benjamin.l.king@maine.edu
Phone 207-581-2803
Organization name University of Maine
Department Molecular and Biomedical Sciences
Street address 5735 Hitchner Hall
City Orono
State/province ME
ZIP/Postal code 04469
Country USA
 
Platforms (3)
GPL11347 Illumina Genome Analyzer II (Leucoraja erinacea)
GPL11348 Illumina Genome Analyzer II (Scyliorhinus canicula)
GPL11349 Illumina Genome Analyzer II (Callorhinchus milii)
Samples (3)
GSM643957 Leucoraja erinacea pooled Stage 20-29 embryos
GSM643958 Scyliorhinus canicula pooled Stage 24-30 embryos
GSM643959 Callorhinchus milii pooled Stage 32 embryos
Relations
SRA SRP004911
BioProject PRJNA135005

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE26235_RAW.tar 53.3 Mb (http)(custom) TAR (of CSV, FA)
Raw data are available in SRA
Processed data provided as supplementary file

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