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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 26, 2024 |
| Title |
Expression profiling of mouse livers with deletion of paternally-expressed, imprinted Mir483 [RNA-seq] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
In this study we generated mice with constitutive deletion of microRNA Mir483, which is imprinted and expressed from the paternal allele only. Whole transcriptome analysis was performed by RNA-seq in livers collected from E18.5 fetuses (mutants with deletion of paternal allele - Mir483Pat-KO - and wild-type controls).
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| Overall design |
We performed RNA-seq analysis in E18.5 mouse livers of female fetuses with deletion of paternally-expressed microRNA Mir483 (n=5 biological replicates) and wild-type littermate controls (n=5 biological replicates)
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| Contributor(s) |
Sandovici I, Lam B, Constancia M |
| Citation(s) |
39283743 |
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| Submission date |
Feb 21, 2024 |
| Last update date |
Feb 14, 2025 |
| Contact name |
Brian Yee Hong Lam |
| E-mail(s) |
yhbl2@cam.ac.uk
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| Organization name |
University of Cambridge
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| Department |
Metabolic Research Laboratories
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| Street address |
Box 289 Addenbookes Hospital, Hills Road
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| City |
Cambridge |
| ZIP/Postal code |
CB2 0QQ |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (10)
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| GSM8093338 |
Liver, wild-type, rep4 (RNA-seq) |
| GSM8093339 |
Liver, wild-type, rep5 (RNA-seq) |
| GSM8093340 |
Liver, Mir483Pat-KO, rep1 (RNA-seq) |
| GSM8093341 |
Liver, Mir483Pat-KO, rep2 (RNA-seq) |
| GSM8093342 |
Liver, Mir483Pat-KO, rep3 (RNA-seq) |
| GSM8093343 |
Liver, Mir483Pat-KO, rep4 (RNA-seq) |
| GSM8093344 |
Liver, Mir483Pat-KO, rep5 (RNA-seq) |
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| Relations |
| BioProject |
PRJNA1078902 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE256302_raw_count_IS1.tsv.gz |
478.5 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
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