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Series GSE254989 Query DataSets for GSE254989
Status Public on Feb 21, 2024
Title A common allele increases endometrial Wnt4 expression, with antagonistic implications for pregnancy, reproductive cancers, and endometriosis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The common human single nucleotide polymorphism rs3820282 is associated with multiple phenotypes ranging from gestational length to likelihood of endometriosis and ovarian cancer and can thus serve as a paradigm for a highly pleiotropic genetic variant. Pleiotropy makes it challenging to assign specific causal roles to particular genetic variants. Deleterious mutations in multifunctional genes may cause either the co-occurrence of multiple disorders in the same individuals (i.e., syndromes), or be repeatedly associated with a variety of disorders in a population. Moreover, the adverse effects can be in combination with advantages in other traits, maintaining high frequencies of deleterious alleles in the population. To reveal the causal role of this specific SNP, we investigated the molecular mechanisms affected by rs3820282 in mice. We have shown previously that rs3820282 introduces a high affinity estrogen receptor 1 binding site at the Wnt4 locus. Here we introduced this nucleotide substitution into the homologous site of the mouse genome by CRISPR/Cas 9 and show that this change causes a specific upregulation of Wnt4 transcription in the endometrial stromal cells (but not that of CDC42, also located close to rs3820282) during the preovulatory estrogen peak in late proestrus. Transcriptomic analysis of the whole uterus reveals broad systemic effects on uterine gene expression, including downregulation of proliferation and induction of many progesterone-regulated pro-implantation genes. The effect on proliferation is limited to the luminal epithelium, whereas other effects involve the uterine stromal compartment. We suggest that in the uterus, these changes could contribute to increased permissiveness to embryo invasion. Yet in other estrogen-responsive tissues, the same changes potentially lead to decreased resistance to invasion by cancer cells and endometriotic foci. A single molecular effect of rs3820282 on Wnt4 expression may thus underlie the various associated phenotypic effects.
 
Overall design To investigate the influence the SNP rs3820282 on uterine expression patterns we generated CRISPR/Cas9 knock-in lines with this substitution into BL/6 mice. We then collected uteri from proestrus and 17.5dpc wildtype and transgenic females and conducted RNAseq.
 
Contributor(s) Pavlicev M, McDonough-Goldstein C
Citation(s) 38346980
Submission date Feb 03, 2024
Last update date Feb 21, 2024
Contact name Mihaela Pavlicev
E-mail(s) mihaela.pavlicev@univie.ac.at
Organization name University of Vienna
Department Evolutionary Biology
Street address Djerassiplatz 1
City Vienna
ZIP/Postal code 1030
Country Austria
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (10)
GSM8061798 TG.PE.931.F
GSM8061799 WT.PE.307.F
GSM8061800 TG.PE.965.F
Relations
BioProject PRJNA1072980

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE254989_rs3820282.processed.data.txt.gz 1.4 Mb (ftp)(http) TXT
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Raw data are available in SRA

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