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Series GSE254659 Query DataSets for GSE254659
Status Public on Apr 01, 2024
Title Centromeric chromatin in mitosis reorganizes into a functional structure stabilized by cohesin [NG-Capture-C]
Organism Gallus gallus
Experiment type Other
Summary Three-dimensional organization of mitotic chromosomes is established by cohesin and condensin complexes. In the centromere, cohesin maintains sister chromatid pairing until anaphase onset, while condensin provides elastic resistance to spindle forces. However, how condensin and cohesin structure vertebrate centromeres remains unclear. By super-resolution imaging, Capture-C analysis and polymer modeling we show that vertebrate centromeres are partitioned into two condensin-dependent subdomains during mitosis. This bipartite sub-structure is found in human, mouse and chicken centromeres, and is therefore a fundamental feature of vertebrate centromere. Super-resolution imaging and electron tomography reveal that bipartite centromeres assemble bipartite kinetochores with each subdomain capable of binding a distinct microtubule bundle. Cohesin helps to link the centromere subdomains, limiting their separation in response to spindle forces and preventing merotelic attachments. The two-domain structure described here may have implications for avoiding chromosomal instability as uncoupling of centromere subdomains is a common feature of lagging chromosomes in cancer cells.
 
Overall design NG-Capture-C analysis to inveistigate chromatin organisation of non-repetitive centromres such as Z and 5 in chicken DT40 CDK1as cells at G2 and prometaphase.
 
Contributor(s) Samejima K, Robertoson D, Earnshaw WC
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Submission date Jan 30, 2024
Last update date Apr 01, 2024
Contact name Shaun Michael Webb
E-mail(s) shaun.webb@ed.ac.uk
Organization name University of Edinburgh
Department Wellcome Trust Centre for Cell Biology
Lab Bioinformatics Core Facility
Street address 2.21 Swann Building, Kings Buildings
City Edinburgh
ZIP/Postal code EH9 3JR
Country United Kingdom
 
Platforms (2)
GPL19005 Illumina HiSeq 2500 (Gallus gallus)
GPL26853 Illumina NovaSeq 6000 (Gallus gallus)
Samples (60)
GSM8047983 SMC2au_G2_P1_rep1
GSM8047984 SMC2au_G2_P2_rep1
GSM8047985 SMC2au_G2_P3_rep1
This SubSeries is part of SuperSeries:
GSE254182 Centromeric chromatin in mitosis reorganizes into a functional structure stabilized by cohesin
Relations
BioProject PRJNA1071267

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Supplementary file Size Download File type/resource
GSE254659_RAW.tar 30.6 Mb (http)(custom) TAR (of BEDGRAPH)
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Raw data are available in SRA

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