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Series GSE25259 Query DataSets for GSE25259
Status Public on Nov 11, 2010
Title modENCODE_White Lab: genome-wide ChIP-chip data
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains ChIP-chip data on Affymetrix Drosophila Tiling 2.0R arrays for multiple transcription factor antibodies at various time-points of Drosophila development.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design For each combination of time-point and antibody, ChIP experiments have been performed and hybridized on Affymetrix Drosophila Tiling 2.0R arrays. At least 3 biological replicates for the ChIP sample have been hybridized.
Web link http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
 
Contributor(s) Negre N, Bild NA, White KP
Citation(s) 21430782
BioProject PRJNA63463
Submission date Nov 10, 2010
Last update date Jul 08, 2015
Contact name Kevin P. White
E-mail kpwhite@uchicago.edu
Organization name University of Chicago
Department Institute for Genomics and Systems Biology
Street address 900 E. 57th STR. 10th FL.
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
 
Platforms (1)
GPL6629 [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array
Samples (18)
GSM621326 E0-8_Kr-D2
GSM621327 Kc167_Trl
GSM621328 E-0-4h_bks
This SubSeries is part of SuperSeries:
GSE23537 modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25259_RAW.tar 2.1 Gb (http)(custom) TAR (of CEL, GFF, WIG)
GSE25259_extracted_0-4h_Input.CEL.gz 34.7 Mb (ftp)(http) CEL
GSE25259_extracted_7T-E-0-4h_Input-7T_Ctl1.CEL.gz 34.7 Mb (ftp)(http) CEL
GSE25259_extracted_7T-E-0-4h_input-0-4h-7T_Ctl2.CEL.gz 34.9 Mb (ftp)(http) CEL
GSE25259_extracted_E-0-4h_Input-0-4h_Ctl1.CEL.gz 34.2 Mb (ftp)(http) CEL
GSE25259_extracted_E-0-8h_Input-0-8h-D_Ctl2.CEL.gz 34.6 Mb (ftp)(http) CEL
GSE25259_extracted_E-0-8h_input_0-8h_Ctl1.CEL.gz 33.7 Mb (ftp)(http) CEL
GSE25259_extracted_ISO1_0-4_Input.CEL.gz 33.4 Mb (ftp)(http) CEL
GSE25259_extracted_ISO1_0-8_Input_A.CEL.gz 34.5 Mb (ftp)(http) CEL
GSE25259_extracted_ISO1_0-8_Input_B.CEL.gz 34.0 Mb (ftp)(http) CEL
GSE25259_extracted_ISO1_4-8_Input.CEL.gz 32.7 Mb (ftp)(http) CEL
GSE25259_extracted_Input_0-8h_B.CEL.gz 34.8 Mb (ftp)(http) CEL
GSE25259_extracted_Input_0-8h_C.CEL.gz 34.5 Mb (ftp)(http) CEL
GSE25259_extracted_KC167_Input_A.CEL.gz 32.1 Mb (ftp)(http) CEL
GSE25259_extracted_KC167_Input_B.CEL.gz 33.2 Mb (ftp)(http) CEL
GSE25259_extracted_S2-Cells_Input-S2_Ctl2.CEL.gz 34.0 Mb (ftp)(http) CEL
GSE25259_extracted_S2-Cells_S2-Mock_Ctl1.CEL.gz 33.6 Mb (ftp)(http) CEL
GSE25259_extracted_Su(Hw)PG_E-0-12h_E-0-12h_Input-A-su(hw)_Ctl1.CEL.gz 35.4 Mb (ftp)(http) CEL
GSE25259_extracted_sens-E-4-8h_Input-sens-A-GFP_Ctl1.CEL.gz 31.3 Mb (ftp)(http) CEL
GSE25259_extracted_sens-E-4-8h_Input-sens-A_Ctl1.CEL.gz 32.2 Mb (ftp)(http) CEL
GSE25259_extracted_sens-E-4-8h_Input-sens-B-GFP_Ctl2.CEL.gz 32.9 Mb (ftp)(http) CEL
GSE25259_extracted_sens-E-4-8h_Input-sens-B_Ctl2.CEL.gz 32.6 Mb (ftp)(http) CEL
GSE25259_extracted_sens-E-4-8h_Input-sens-C-GFP_Ctl3.CEL.gz 33.8 Mb (ftp)(http) CEL
GSE25259_extracted_sens-E-4-8h_Input-sens-C_Ctl3.CEL.gz 33.8 Mb (ftp)(http) CEL
Processed data provided as supplementary file
Raw data provided as supplementary file
Raw data is available on Series record

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