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| Status |
Public on Mar 01, 2024 |
| Title |
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiations and Function |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38187557 |
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| Submission date |
Dec 15, 2023 |
| Last update date |
Aug 09, 2024 |
| Contact name |
Yan Xu |
| E-mail(s) |
yan.xu@cchmc.org
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| Phone |
513-6368921
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| Organization name |
Cincinnati Children's Hospital Medical Center
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| Street address |
3333 Burnet Ave
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| City |
Cincinnati |
| State/province |
OH |
| ZIP/Postal code |
45229 |
| Country |
USA |
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| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
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| Samples (46)
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| GSM7977944 |
ATAC lungs, Control, rep4 |
| GSM7977945 |
ATAC lungs, Control, rep5 |
| GSM7977946 |
ATAC lungs, Control, rep6 |
| GSM7977947 |
ATAC lungs, Prdm3/16KO, rep1 |
| GSM7977948 |
ATAC lungs, Prdm3/16KO, rep2 |
| GSM7977949 |
ATAC lungs, Prdm3/16KO, rep3 |
| GSM7977950 |
ATAC lungs, Prdm3/16KO, rep4 |
| GSM7977951 |
ATAC lungs, Prdm3/16KO, rep5 |
| GSM7977952 |
lungs, Wild Type C57Bl6, PRDM16, rep1 |
| GSM7977953 |
lungs, Wild Type C57Bl6, PRDM16, rep2 |
| GSM7977954 |
lungs, Wild Type C57Bl6, PRDM3, rep1 |
| GSM7977955 |
lungs, Wild Type C57Bl6, Rabbit IgG, rep1 |
| GSM7977956 |
lungs, Wild Type C57Bl6, Sheep IgG, rep1 |
| GSM7977957 |
lungs, Wild Type C57Bl6, H3K4me3, rep1 |
| GSM7977958 |
lungs, Wild Type C57Bl6, NKX2-1, rep1 |
| GSM7977959 |
lungs, Wild Type C57Bl6, H3K4me3, rep2 |
| GSM7977960 |
lungs, Wild Type C57Bl6, H3K4me3, rep3 |
| GSM7977961 |
lungs, Wild Type C57Bl6, NKX2-1, rep2 |
| GSM7977962 |
lungs, Wild Type C57Bl6, NKX2-1, rep3 |
| GSM7977963 |
lungs, Wild Type C57Bl6, Rabbit IgG, rep2 |
| GSM7977974 |
RNA lungs, Control, rep1 |
| GSM7977975 |
RNA lungs, Control, rep2 |
| GSM7977976 |
RNA lungs, Control, rep3 |
| GSM7977977 |
RNA lungs, Control, rep4 |
| GSM7977978 |
RNA lungs, Control, rep5 |
| GSM7977979 |
RNA lungs, Control, rep6 |
| GSM7977980 |
RNA lungs, PRDM3/16KO, rep1 |
| GSM7977981 |
RNA lungs, PRDM3/16KO, rep2 |
| GSM7977982 |
RNA lungs, PRDM3/16KO, rep3 |
| GSM7977983 |
RNA lungs, PRDM3/16KO, rep4 |
| GSM7977984 |
RNA lungs, PRDM3/16KO, rep5 |
| GSM7977985 |
scRNA lungs, Control, rep1 |
| GSM7977986 |
scRNA lungs, Control, rep2 |
| GSM7977987 |
scRNA lungs, PRDM3/16KO, Rep1 |
| GSM7977988 |
scRNA lungs, PRDM3/16KO, Rep2 |
| GSM8447828 |
lungs, Control, rep1 |
| GSM8447829 |
lungs, Control IgG, rep1 |
| GSM8447830 |
lungs, Control, rep2 |
| GSM8447831 |
lungs, Control IgG, rep2 |
| GSM8447832 |
lungs, PRDM3/16KO, rep1 |
| GSM8447833 |
lungs, PRDM3/16KO IgG, rep1 |
| GSM8447834 |
lungs, PRDM3/16KO, rep2 |
| GSM8447835 |
lungs, PRDM3/16KO IgG, rep2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE250359 |
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiations and Function [ATAC-seq] |
| GSE250360 |
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiations and Function [Cut&Run] |
| GSE250363 |
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiations and Function [bulk RNA-seq] |
| GSE250365 |
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiations and Function [scRNA-seq] |
| GSE274355 |
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiations and Function [Cut&Run H3K4me3] |
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| Relations |
| BioProject |
PRJNA1053415 |
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