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| Status |
Public on Feb 26, 2024 |
| Title |
Sox9 switch links regeneration to fibrosis at the single-cell level in mammalian kidneys |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38386758 |
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| Submission date |
Dec 08, 2023 |
| Last update date |
Feb 27, 2024 |
| Contact name |
AGCT Core |
| Organization name |
Cedars Sinai Medical Center
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| Department |
BMS
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| Street address |
8687 Melrose Ave, PDC B230
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| City |
West Hollywood |
| State/province |
CA |
| ZIP/Postal code |
90069 |
| Country |
USA |
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| Platforms (2) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (41)
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| GSM7964038 |
10d-2_H3K4me3_Cut&Run |
| GSM7964039 |
10d-2_Input_Cut&Run |
| GSM7964040 |
10d-2_Sox9_Cut&Run |
| GSM7964041 |
10d-3_H3K4me3_Cut&Run |
| GSM7964042 |
10d-3_Input_Cut&Run |
| GSM7964043 |
10d-3_Sox9_Cut&Run |
| GSM7964044 |
10d-4_H3K4me3_Cut&Run |
| GSM7964045 |
10d-4_Input_Cut&Run |
| GSM7964046 |
10d-4_Sox9_Cut&Run |
| GSM7964047 |
48h-1_H3K4me3_Cut&Run |
| GSM7964048 |
48h-1_Input_Cut&Run |
| GSM7964049 |
48h-1_Sox9_Cut&Run |
| GSM7964050 |
48h-2_H3K4me3_Cut&Run |
| GSM7964051 |
48h-2_Input_Cut&Run |
| GSM7964052 |
48h-2_Sox9_Cut&Run |
| GSM7964053 |
48h-3_H3K4me3_Cut&Run |
| GSM7964054 |
48h-3_Input_Cut&Run |
| GSM7964055 |
48h-3_Sox9_Cut&Run |
| GSM7964056 |
48h-4_H3K4me3_Cut&Run |
| GSM7964057 |
48h-4_Input_Cut&Run |
| GSM7964058 |
48h-4_Sox9_Cut&Run |
| GSM7964059 |
cells activating Axin2 at d6 post-IRI (tdTposGFPpos cells), Tamoxifen at d2 and d4 post-IRI, FACS-enriched, biol rep 1 |
| GSM7964060 |
cells activating Axin2 at d6 post-IRI (tdTposGFPpos cells), Tamoxifen at d2 and d4 post-IRI, FACS-enriched, biol rep 2 |
| GSM7964061 |
cells activating Axin2 at d6 post-IRI (tdTposGFPpos cells), Tamoxifen at d2 and d4 post-IRI, FACS-enriched, biol rep 3 |
| GSM7964062 |
tdTnegGFPpos cells at d6 post-IRI, Tamoxifen at d2 and d4 post-IRI, FACS-enriched, biol rep 1 |
| GSM7964063 |
tdTnegGFPpos cells at d6 post-IRI, Tamoxifen at d2 and d4 post-IRI, FACS-enriched, biol rep 2 |
| GSM7964064 |
tdTnegGFPpos cells at d6 post-IRI, Tamoxifen at d2 and d4 post-IRI, FACS-enriched, biol rep 3 |
| GSM7964065 |
uninjured Slc34a1 expressing PTECs, Tamoxifen-labeled, FACS-enriched, biol rep 1 |
| GSM7964066 |
uninjured Slc34a1 expressing PTECs, Tamoxifen-labeled, FACS-enriched, biol rep 2 |
| GSM7964067 |
uninjured Slc34a1 expressing PTECs, Tamoxifen-labeled, FACS-enriched, biol rep 3 |
| GSM7964068 |
cells activating Sox9 at 48h post-IRI, Tamoxifen at IRI, FACS-enriched, biol rep 1 |
| GSM7964069 |
cells activating Sox9 at 48h post-IRI, Tamoxifen at IRI, FACS-enriched, biol rep 2 |
| GSM7964070 |
cells activating Sox9 at 48h post-IRI, Tamoxifen at IRI, FACS-enriched, biol rep 3 |
| GSM7964071 |
cells expressing Sox9 at d14 post-IRI, Tamoxifen d10, d12 post-IRI, FACS-enriched, biol rep 1 |
| GSM7964072 |
cells expressing Sox9 at d14 post-IRI, Tamoxifen d10, d12 post-IRI, FACS-enriched, biol rep 2 |
| GSM7964073 |
cells expressing Sox9 at d14 post-IRI, Tamoxifen d10, d12 post-IRI, FACS-enriched, biol rep 3 |
| GSM7964190 |
Pos121222 - snATACseq |
| GSM7964191 |
Pos121322 - snATACseq |
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| This SuperSeries is composed of the following SubSeries:
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| GSE249776 |
Sox9 switch links regeneration to fibrosis at the single-cell level in mammalian kidneys [CUT&Run] |
| GSE249777 |
Sox9 switch links regeneration to fibrosis at the single-cell level in mammalian kidneys [RNA-Seq 1] |
| GSE249778 |
Sox9 switch links regeneration to fibrosis at the single-cell level in mammalian kidneys [RNA-Seq 2] |
| GSE249780 |
Sox9 switch links regeneration to fibrosis at the single-cell level in mammalian kidneys [snATAC-Seq] |
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| Relations |
| BioProject |
PRJNA1050312 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE249781_RAW.tar |
3.2 Gb |
(http)(custom) |
TAR (of BIGWIG, H5, NARROWPEAK, TBI, TSV) |
SRA Run Selector |
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