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Series GSE249279 Query DataSets for GSE249279
Status Public on Dec 06, 2023
Title Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary Systemic sclerosis (SSc) is a devastating autoimmune disease characterized by excessive production and accumulation of extracellular matrix, leading to fibrosis of skin and other internal organs. However, the main cellular participants in SSc skin fibrosis remain incompletely understood. Here using differentiation trajectories at a single cell level, we demonstrate a dual source of extracellular matrix deposition in SSc skin from both myofibroblasts and endothelial-to-mesenchymal-transitioning cells (EndoMT). We further define a central role of Hippo pathway effectors in differentiation and homeostasis of myofibroblast and EndoMT, respectively, and show that myofibroblasts and EndoMTs act as central communication hubs that drive key pro-fibrotic signaling pathways in SSc. Together, our data help characterize myofibroblast differentiation and EndoMT phenotypes in SSc skin, and hint that modulation of the Hippo pathway may contribute in reversing the pro-fibrotic phenotypes in myofibroblasts and EndoMTs.
 
Overall design Single cell RNA sequencing and spatial sequencing on human scleroderma skin tissues
 
Contributor(s) Ma F, Gudjonsson JE
Citation(s) 38172207, 40164604
Submission date Dec 04, 2023
Last update date Apr 10, 2025
Contact name Feiyang Ma
Organization name UCLA
Department Molecular Biology Institute
Lab Pellegrini Lab
Street address 610, Charles Young Dr East, TLSB 3000C
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (42)
GSM7932779 SCD-1908204
GSM7932780 SCD-1908205
GSM7932781 SCD-1909116
Relations
BioProject PRJNA1048434

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE249279_RAW.tar 34.5 Mb (http)(custom) TAR (of TAR)
GSE249279_scRNA-seq_merged_raw_counts.h5 392.9 Mb (ftp)(http) H5
SRA Run SelectorHelp
Raw data are available in SRA

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